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_pkgdown.yml
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_pkgdown.yml
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destination: docs
url: https://showteeth.github.io/DEbPeak/
template:
bootstrap: 5
bootswatch: flatly
includes:
in_header: /home/songyabing/R/learn/tmp/DEbPeak/ManualFigures/header.html
navbar:
left:
- icon: fa-home fa-lg
href: index.html
- text: Getting Started
href: articles/DEbPeak_All.html
- text: Articles
menu:
- text: Parse GEO
href: articles/ParseGEO.html
- text: Quality Control
href: articles/QualityControl.html
- text: Principal Component Analysis (RNA-seq)
href: articles/PrincipalComponentAnalysis.html
- text: Principal Component Analysis (Peak-related)
href: articles/PrincipalComponentAnalysisPeak.html
- text: Differential Expression Analysis (RNA-seq)
href: articles/DifferentialExpressionAnalysis.html
- text: Differential Expression Analysis (Peak-related)
href: articles/DifferentialExpressionAnalysisPeak.html
- text: Functional Enrichment Analysis (RNA-seq)
href: articles/FunctionalEnrichmentAnalysis.html
- text: Functional Enrichment Analysis (Peak-related)
href: articles/FunctionalEnrichmentAnalysisPeak.html
- text: Predict TFs (RNA-seq)
href: articles/IdentifyRegulator.html
- text: Motif Analysis (Peak-related)
href: articles/MotifAnalysis.html
- text: Integrate RNA-seq with ChIP-seq (consensus peak)
href: articles/IntegrateChIP.html
- text: Integrate RNA-seq with ChIP-seq (differential analysis)
href: articles/IntegrateChIPDE.html
- text: Integrate RNA-seq with ATAC-seq (consensus peak)
href: articles/IntegrateATAC.html
- text: Integrate RNA-seq with ATAC-seq (differential analysis)
href: articles/IntegrateATACDE.html
- text: Integrate RNA-seq with ChIP-seq and ATAC-seq
href: articles/IntegrateChIPATAC.html
- text: Utils
href: articles/Utils.html
- text: Reference
href: reference/index.html
- text: Change log
href: news/index.html
right:
- icon: fa-github fa-lg
href: https://github.com/showteeth/DEbPeak