diff --git a/docs/jats.md b/docs/jats.md index 7829353..5ec4f17 100644 --- a/docs/jats.md +++ b/docs/jats.md @@ -15,7 +15,7 @@ JATS XML Specifications/Recommendations: A corpus of JATS XML articles embodies a particular "dialect" of JATS XML. -Archived Corpora: +Publicly Archived Corpora of JATS XML: * **PMC XML**: [PubMed Central (PMC) Open Access Subset](https://www.ncbi.nlm.nih.gov/pmc/tools/openftlist/) * **eLife XML**: [eLife article XML repository](https://github.com/elifesciences/elife-article-xml) @@ -30,46 +30,79 @@ Non-archived Corpora:
XML Articles Parsed | +Article Repository | +XML Parsing Context | Software | Language |
---|---|---|---|---|
PubMed Central (HTML generation) | +||||
PubMed Central | +? | ? | ||
Europe PMC (HTML generation) | -? full-text-xsl | -JavaScript ? (and XSL) | +||
PubMed Central | +PubReader (discontinued 2024) | +PubReader | +JavaScript + XSL | |
bioRxiv JATS XML to eLife Reviewed Preprints | +||||
Europe PMC | +HTML generation | +full-text-xsl + closed-source | +XSL + JavaScript | +|
Europe PMC | +internal workflow after manuscript submission | +full-text-xsl + + xpub-epmc + | +XSL | +|
eLife Reviewed Preprints | +ingestion of bioRxiv JATS XML | Encoda | TypeScript | |
Servers using Open Preprint Systems (OPS) | +? | +OPS | +PHP | +|
Journals using Open Journal Systems (OJS) | +? | +OJS | +PHP | +|
American Mathematical Society (AMS) articles | +American Mathematical Society (AMS) journals | +internal workflow | [AMS texml-to-html](https://github.com/AmerMathSoc/texml-to-html) | JavaScript |
Articles of journals using Open Journal Systems (OJS) | -OJS | -PHP | -||
Articles of some journals hosted by Centre Mersenne | +Some journals hosted by Centre Mersenne | +ingestion of article data and text into database | MathDoc platform | Python |
? | +HTML generation | +packtools | +Python + XSL | +|
? | +HTML generation | eLife Lens and derivatives | JavaScript |