run extract_microbiome_reads.r and Error in split.default(taxid, ceiling(seq_along(taxid)/opt$ntaxid))

[sheyong111]

Rscript /data3/shey/Data/HNSC/SAHMI-main/SAHMI-main/functions/extract_microbiome_reads.r
--sample_name SRR16936931
--fq SRR16936931/SRR16936931_1.fq
--fq SRR16936931/SRR16936931_2.fq
--kraken_report SRR16936931/SRR16936931.kraken.report.txt
--mpa_report SRR16936931/SRR16936931.kraken.report.mpa.txt
--out_path SRR16936931/extract_microbiome_reads
── Attaching core tidyverse packages ─────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 2.0.0 ──
✔ dplyr 1.1.4 ✔ readr 2.1.4
✔ forcats 1.0.0 ✔ stringr 1.5.1
✔ ggplot2 3.4.4 ✔ tibble 3.2.1
✔ lubridate 1.9.3 ✔ tidyr 1.3.0
✔ purrr 1.0.2
── Conflicts ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
ℹ Use the conflicted package (http://conflicted.r-lib.org/) to force all conflicts to become errors
[conflicted] Will prefer dplyr::filter over any other package.
[conflicted] Will prefer dplyr::lag over any other package.
Error in split.default(taxid, ceiling(seq_along(taxid)/opt$ntaxid)) :
first argument must be a vector
Calls: split -> split.default
Execution halted

[Sixia0]

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