diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml new file mode 100644 index 0000000..b478495 --- /dev/null +++ b/.github/workflows/python-app.yml @@ -0,0 +1,57 @@ +# This workflow will install Python dependencies, run tests and lint with a single version of Python +# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python + +name: Python application + +on: + push: + branches: [ "main" ] + pull_request: + branches: [ "main" ] + +permissions: + contents: read + +jobs: + build: + + runs-on: ubuntu-latest + + steps: + - uses: actions/checkout@v4 + - name: Set up Python 3.11 + uses: actions/setup-python@v3 + with: + python-version: "3.11" + - name: Install Poetry + uses: snok/install-poetry@v1.4.1 + with: + version: 2.1.1 + virtualenvs-create: true + - name: Configure poetry + run: | + poetry config virtualenvs.in-project true + + - name: Poetry Cache + uses: actions/cache@v4 + id: poetry-cache + with: + path: .venv + key: venv-${{ hashFiles('**/poetry.lock', '**/pyproject.toml') }} + - name: Install dependencies + run: | + python -m pip install --upgrade pip + poetry install --no-root + pip install flake8 pytest + if [ -f requirements.txt ]; then pip install -r requirements.txt; fi + - name: Lint with flake8 + run: | + # stop the build if there are Python syntax errors or undefined names + flake8 --exclude=.venv/ . --count --select=E9,F63,F7,F82 --show-source --statistics + # exit-zero treats all errors as warnings. 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"pytest-cov-6.0.0.tar.gz", hash = "sha256:fde0b595ca248bb8e2d76f020b465f3b107c9632e6a1d1705f17834c89dcadc0"}, + {file = "pytest_cov-6.0.0-py3-none-any.whl", hash = "sha256:eee6f1b9e61008bd34975a4d5bab25801eb31898b032dd55addc93e96fcaaa35"}, +] + +[package.dependencies] +coverage = {version = ">=7.5", extras = ["toml"]} +pytest = ">=4.6" + +[package.extras] +testing = ["fields", "hunter", "process-tests", "pytest-xdist", "virtualenv"] + [metadata] lock-version = "2.1" python-versions = ">=3.11" -content-hash = "7066be8c7615e09c602da7e4c1e99e4629a7adae4fcaf61fcf9ef5112784b9aa" +content-hash = "7e382fd07c1abe7f53275f40d28b688bb98caf7e9ac4bd5313ee6c7bde5f7dcb" diff --git a/pyproject.toml b/pyproject.toml index ac89576..d5d9e68 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,10 +9,19 @@ license = "Apache-2.0" readme = "README.md" requires-python = ">=3.11" dependencies = [ - "pydicom >=3.0.1", - "numpy >= 2.2.3" + "pydicom ~=3.0.1", + "numpy ~= 2.2.3" ] +package-mode = false [build-system] requires = ["poetry-core>=2.0"] build-backend = "poetry.core.masonry.api" + +[tool.pytest] +testpaths = ["rtregistrationcalc/tests"] +python_files = "test_*.py" + +[tool.poetry.group.dev.dependencies] +pytest = "^8.3.5" +pytest-cov = "^6.0.0" \ No newline at end of file diff --git a/test_gen_inroom_rtss.py b/test_gen_inroom_rtss.py index a4b8f77..8723bb6 100644 --- a/test_gen_inroom_rtss.py +++ b/test_gen_inroom_rtss.py @@ -16,7 +16,7 @@ def test_valid_orientation_and_position(self): # Handles empty or incomplete orientation and position lists gracefully def test_empty_or_incomplete_lists(self): - with pytest.raises(IndexError): + with pytest.raises((IndexError, ValueError)): img_stack_displacement([], []) - with pytest.raises(IndexError): + with pytest.raises((IndexError, ValueError)): img_stack_displacement(["1.0", "0.0"], ["0.0"])