-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathrenv.lock
8474 lines (8474 loc) · 492 KB
/
renv.lock
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
{
"R": {
"Version": "4.4.0",
"Repositories": [
{
"Name": "CRAN",
"URL": "https://cloud.r-project.org"
}
]
},
"Packages": {
"BBmisc": {
"Package": "BBmisc",
"Version": "1.13",
"Source": "Repository",
"Title": "Miscellaneous Helper Functions for B. Bischl",
"Authors@R": "c( person(\"Bernd\", \"Bischl\", , \"[email protected]\", role = c(\"aut\", \"cre\")), person(\"Michel\", \"Lang\", , \"[email protected]\", role = \"aut\"), person(\"Jakob\", \"Bossek\", , \"[email protected]\", role = \"aut\"), person(\"Daniel\", \"Horn\", , \"[email protected]\", role = \"aut\"), person(\"Jakob\", \"Richter\", , \"[email protected]\", role = \"aut\"), person(\"Dirk\", \"Surmann\", , \"[email protected]\", role = \"aut\") )",
"Description": "Miscellaneous helper functions for and from B. Bischl and some other guys, mainly for package development.",
"License": "BSD_2_clause + file LICENSE",
"URL": "https://github.com/berndbischl/BBmisc",
"BugReports": "https://github.com/berndbischl/BBmisc/issues",
"Imports": [
"checkmate (>= 1.8.0)",
"data.table",
"methods",
"stats",
"utils"
],
"Suggests": [
"codetools",
"microbenchmark",
"testthat"
],
"ByteCompile": "yes",
"Encoding": "UTF-8",
"RoxygenNote": "7.2.1",
"NeedsCompilation": "yes",
"Author": "Bernd Bischl [aut, cre], Michel Lang [aut], Jakob Bossek [aut], Daniel Horn [aut], Jakob Richter [aut], Dirk Surmann [aut]",
"Maintainer": "Bernd Bischl <[email protected]>",
"Repository": "CRAN"
},
"BH": {
"Package": "BH",
"Version": "1.87.0-1",
"Source": "Repository",
"Type": "Package",
"Title": "Boost C++ Header Files",
"Date": "2024-12-17",
"Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"John W.\", \"Emerson\", role = \"aut\"), person(\"Michael J.\", \"Kane\", role = \"aut\", comment = c(ORCID = \"0000-0003-1899-6662\")))",
"Description": "Boost provides free peer-reviewed portable C++ source libraries. A large part of Boost is provided as C++ template code which is resolved entirely at compile-time without linking. This package aims to provide the most useful subset of Boost libraries for template use among CRAN packages. By placing these libraries in this package, we offer a more efficient distribution system for CRAN as replication of this code in the sources of other packages is avoided. As of release 1.84.0-0, the following Boost libraries are included: 'accumulators' 'algorithm' 'align' 'any' 'atomic' 'beast' 'bimap' 'bind' 'circular_buffer' 'compute' 'concept' 'config' 'container' 'date_time' 'detail' 'dynamic_bitset' 'exception' 'flyweight' 'foreach' 'functional' 'fusion' 'geometry' 'graph' 'heap' 'icl' 'integer' 'interprocess' 'intrusive' 'io' 'iostreams' 'iterator' 'lambda2' 'math' 'move' 'mp11' 'mpl' 'multiprecision' 'numeric' 'pending' 'phoenix' 'polygon' 'preprocessor' 'process' 'propery_tree' 'qvm' 'random' 'range' 'scope_exit' 'smart_ptr' 'sort' 'spirit' 'tuple' 'type_traits' 'typeof' 'unordered' 'url' 'utility' 'uuid'.",
"License": "BSL-1.0",
"URL": "https://github.com/eddelbuettel/bh, https://dirk.eddelbuettel.com/code/bh.html",
"BugReports": "https://github.com/eddelbuettel/bh/issues",
"NeedsCompilation": "no",
"Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), John W. Emerson [aut], Michael J. Kane [aut] (<https://orcid.org/0000-0003-1899-6662>)",
"Maintainer": "Dirk Eddelbuettel <[email protected]>",
"Repository": "CRAN"
},
"CoxBoost": {
"Package": "CoxBoost",
"Version": "1.5",
"Source": "GitHub",
"Title": "Cox Models by Likelihood Based Boosting for a Single Survival Endpoint or Competing Risks",
"Author": "Harald Binder <[email protected]>",
"Maintainer": "Harald Binder <[email protected]>",
"Depends": [
"R (>= 2.14.0)",
"survival",
"Matrix",
"prodlim"
],
"Suggests": [
"parallel",
"snowfall"
],
"Imports": [
"stats",
"grDevices",
"graphics"
],
"Description": "Provides routines for fitting Cox models by likelihood based boosting for a single endpoint or in presence of competing risks.",
"License": "GPL-2",
"RoxygenNote": "7.1.1",
"Encoding": "UTF-8",
"NeedsCompilation": "yes",
"RemoteType": "github",
"RemoteHost": "api.github.com",
"RemoteRepo": "CoxBoost",
"RemoteUsername": "binderh",
"RemotePkgRef": "binderh/CoxBoost@1dc47d7051f660b28520670b34d031143f9eadfd",
"RemoteRef": "1dc47d7051f660b28520670b34d031143f9eadfd",
"RemoteSha": "1dc47d7051f660b28520670b34d031143f9eadfd"
},
"DiagrammeR": {
"Package": "DiagrammeR",
"Version": "1.0.11",
"Source": "Repository",
"Type": "Package",
"Title": "Graph/Network Visualization",
"Authors@R": "c( person(\"Richard\", \"Iannone\", , \"[email protected]\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-3925-190X\")), person(\"Olivier\", \"Roy\", , \"[email protected]\", role = \"aut\") )",
"Description": "Build graph/network structures using functions for stepwise addition and deletion of nodes and edges. Work with data available in tables for bulk addition of nodes, edges, and associated metadata. Use graph selections and traversals to apply changes to specific nodes or edges. A wide selection of graph algorithms allow for the analysis of graphs. Visualize the graphs and take advantage of any aesthetic properties assigned to nodes and edges.",
"License": "MIT + file LICENSE",
"URL": "https://rich-iannone.github.io/DiagrammeR/, https://github.com/rich-iannone/DiagrammeR",
"BugReports": "https://github.com/rich-iannone/DiagrammeR/issues",
"Depends": [
"R (>= 3.2)"
],
"Imports": [
"dplyr (>= 1.0.7)",
"glue (>= 1.5.0)",
"htmltools (>= 0.5.2)",
"htmlwidgets (>= 1.5)",
"igraph (>= 1.4.0)",
"magrittr (>= 1.5)",
"purrr (>= 0.3.4)",
"RColorBrewer (>= 1.1-2)",
"readr (>= 2.1.1)",
"rlang (>= 1.1.0)",
"cli",
"rstudioapi (>= 0.7)",
"scales (>= 1.1)",
"stringr (>= 1.4)",
"tibble (>= 3.1)",
"tidyr (>= 1.1)",
"viridisLite (>= 0.4.2)",
"visNetwork (>= 2.1.0)"
],
"Suggests": [
"curl",
"DiagrammeRsvg",
"knitr",
"rmarkdown",
"rsvg",
"testthat (>= 3.1.0)",
"withr"
],
"Config/testthat/edition": "3",
"Encoding": "UTF-8",
"LazyData": "true",
"RoxygenNote": "7.3.1",
"NeedsCompilation": "no",
"Author": "Richard Iannone [aut, cre] (<https://orcid.org/0000-0003-3925-190X>), Olivier Roy [aut]",
"Maintainer": "Richard Iannone <[email protected]>",
"Repository": "CRAN"
},
"DiceKriging": {
"Package": "DiceKriging",
"Version": "1.6.0",
"Source": "Repository",
"Title": "Kriging Methods for Computer Experiments",
"Date": "2021-02-23",
"Author": "Olivier Roustant, David Ginsbourger, Yves Deville. Contributors: Clement Chevalier, Yann Richet.",
"Maintainer": "Olivier Roustant <[email protected]>",
"Description": "Estimation, validation and prediction of kriging models. Important functions : km, print.km, plot.km, predict.km.",
"Depends": [
"methods"
],
"Suggests": [
"rgenoud (>= 5.8-2.0)",
"foreach",
"doParallel",
"testthat",
"numDeriv"
],
"License": "GPL-2 | GPL-3",
"URL": "https://dicekrigingclub.github.io/www/",
"NeedsCompilation": "yes",
"Repository": "CRAN"
},
"Formula": {
"Package": "Formula",
"Version": "1.2-5",
"Source": "Repository",
"Date": "2023-02-23",
"Title": "Extended Model Formulas",
"Description": "Infrastructure for extended formulas with multiple parts on the right-hand side and/or multiple responses on the left-hand side (see <doi:10.18637/jss.v034.i01>).",
"Authors@R": "c(person(given = \"Achim\", family = \"Zeileis\", role = c(\"aut\", \"cre\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0003-0918-3766\")), person(given = \"Yves\", family = \"Croissant\", role = \"aut\", email = \"[email protected]\"))",
"Depends": [
"R (>= 2.0.0)",
"stats"
],
"License": "GPL-2 | GPL-3",
"NeedsCompilation": "no",
"Author": "Achim Zeileis [aut, cre] (<https://orcid.org/0000-0003-0918-3766>), Yves Croissant [aut]",
"Maintainer": "Achim Zeileis <[email protected]>",
"Repository": "CRAN"
},
"Hmisc": {
"Package": "Hmisc",
"Version": "5.2-2",
"Source": "Repository",
"Date": "2025-01-10",
"Title": "Harrell Miscellaneous",
"Authors@R": "c(person(given = \"Frank E\", family = \"Harrell Jr\", role = c(\"aut\", \"cre\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0002-8271-5493\")), person(given = \"Charles\", family = \"Dupont\", role = \"ctb\", email = \"[email protected]\", comment = \"contributed several functions and maintains latex functions\"))",
"Maintainer": "Frank E Harrell Jr <[email protected]>",
"Depends": [
"R (>= 4.2.0)"
],
"Imports": [
"methods",
"ggplot2",
"cluster",
"rpart",
"nnet",
"foreign",
"gtable",
"grid",
"gridExtra",
"data.table",
"htmlTable (>= 1.11.0)",
"viridis",
"htmltools",
"base64enc",
"colorspace",
"rmarkdown",
"knitr",
"Formula"
],
"Suggests": [
"survival",
"qreport",
"acepack",
"chron",
"rms",
"mice",
"rstudioapi",
"tables",
"plotly (>= 4.5.6)",
"rlang",
"plyr",
"VGAM",
"leaps",
"pcaPP",
"digest",
"parallel",
"polspline",
"abind",
"kableExtra",
"rio",
"lattice",
"latticeExtra",
"gt",
"sparkline",
"jsonlite",
"htmlwidgets",
"qs",
"getPass",
"keyring",
"safer",
"htm2txt"
],
"Description": "Contains many functions useful for data analysis, high-level graphics, utility operations, functions for computing sample size and power, simulation, importing and annotating datasets, imputing missing values, advanced table making, variable clustering, character string manipulation, conversion of R objects to LaTeX and html code, recoding variables, caching, simplified parallel computing, encrypting and decrypting data using a safe workflow, general moving window statistical estimation, and assistance in interpreting principal component analysis.",
"License": "GPL (>= 2)",
"LazyLoad": "Yes",
"URL": "https://hbiostat.org/R/Hmisc/",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.2",
"NeedsCompilation": "yes",
"Author": "Frank E Harrell Jr [aut, cre] (<https://orcid.org/0000-0002-8271-5493>), Charles Dupont [ctb] (contributed several functions and maintains latex functions)",
"Repository": "CRAN"
},
"JM": {
"Package": "JM",
"Version": "1.5-2",
"Source": "Repository",
"Title": "Joint Modeling of Longitudinal and Survival Data",
"Date": "2022-08-08",
"Author": "Dimitris Rizopoulos <[email protected]>",
"Maintainer": "Dimitris Rizopoulos <[email protected]>",
"Description": "Shared parameter models for the joint modeling of longitudinal and time-to-event data.",
"Depends": [
"R (>= 3.0.0)",
"MASS",
"nlme",
"splines",
"survival"
],
"Enhances": [
"xtable"
],
"LazyLoad": "yes",
"LazyData": "yes",
"License": "GPL (>= 2)",
"URL": "http://jmr.r-forge.r-project.org/",
"NeedsCompilation": "no",
"Repository": "CRAN"
},
"KMsurv": {
"Package": "KMsurv",
"Version": "0.1-5",
"Source": "Repository",
"Date": "2012/12/03",
"Title": "Data sets from Klein and Moeschberger (1997), Survival Analysis",
"Author": "Original by Klein and Moeschberger, modifications by Jun Yan <[email protected]>",
"Maintainer": "Jun Yan <[email protected]>",
"Description": "Data sets and functions for Klein and Moeschberger (1997), \"Survival Analysis, Techniques for Censored and Truncated Data\", Springer.",
"License": "GPL (>= 3)",
"Repository": "CRAN"
},
"KernSmooth": {
"Package": "KernSmooth",
"Version": "2.23-26",
"Source": "Repository",
"Priority": "recommended",
"Date": "2024-12-10",
"Title": "Functions for Kernel Smoothing Supporting Wand & Jones (1995)",
"Authors@R": "c(person(\"Matt\", \"Wand\", role = \"aut\", email = \"[email protected]\"), person(\"Cleve\", \"Moler\", role = \"ctb\", comment = \"LINPACK routines in src/d*\"), person(\"Brian\", \"Ripley\", role = c(\"trl\", \"cre\", \"ctb\"), email = \"[email protected]\", comment = \"R port and updates\"))",
"Note": "Maintainers are not available to give advice on using a package they did not author.",
"Depends": [
"R (>= 2.5.0)",
"stats"
],
"Suggests": [
"MASS",
"carData"
],
"Description": "Functions for kernel smoothing (and density estimation) corresponding to the book: Wand, M.P. and Jones, M.C. (1995) \"Kernel Smoothing\".",
"License": "Unlimited",
"ByteCompile": "yes",
"NeedsCompilation": "yes",
"Author": "Matt Wand [aut], Cleve Moler [ctb] (LINPACK routines in src/d*), Brian Ripley [trl, cre, ctb] (R port and updates)",
"Maintainer": "Brian Ripley <[email protected]>",
"Repository": "CRAN"
},
"MASS": {
"Package": "MASS",
"Version": "7.3-64",
"Source": "Repository",
"Priority": "recommended",
"Date": "2025-01-06",
"Revision": "$Rev: 3680 $",
"Depends": [
"R (>= 4.4.0)",
"grDevices",
"graphics",
"stats",
"utils"
],
"Imports": [
"methods"
],
"Suggests": [
"lattice",
"nlme",
"nnet",
"survival"
],
"Authors@R": "c(person(\"Brian\", \"Ripley\", role = c(\"aut\", \"cre\", \"cph\"), email = \"[email protected]\"), person(\"Bill\", \"Venables\", role = c(\"aut\", \"cph\")), person(c(\"Douglas\", \"M.\"), \"Bates\", role = \"ctb\"), person(\"Kurt\", \"Hornik\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"Albrecht\", \"Gebhardt\", role = \"trl\", comment = \"partial port ca 1998\"), person(\"David\", \"Firth\", role = \"ctb\", comment = \"support functions for polr\"))",
"Description": "Functions and datasets to support Venables and Ripley, \"Modern Applied Statistics with S\" (4th edition, 2002).",
"Title": "Support Functions and Datasets for Venables and Ripley's MASS",
"LazyData": "yes",
"ByteCompile": "yes",
"License": "GPL-2 | GPL-3",
"URL": "http://www.stats.ox.ac.uk/pub/MASS4/",
"Contact": "<[email protected]>",
"NeedsCompilation": "yes",
"Author": "Brian Ripley [aut, cre, cph], Bill Venables [aut, cph], Douglas M. Bates [ctb], Kurt Hornik [trl] (partial port ca 1998), Albrecht Gebhardt [trl] (partial port ca 1998), David Firth [ctb] (support functions for polr)",
"Maintainer": "Brian Ripley <[email protected]>",
"Repository": "CRAN"
},
"Matrix": {
"Package": "Matrix",
"Version": "1.7-2",
"Source": "Repository",
"VersionNote": "do also bump src/version.h, inst/include/Matrix/version.h",
"Date": "2025-01-20",
"Priority": "recommended",
"Title": "Sparse and Dense Matrix Classes and Methods",
"Description": "A rich hierarchy of sparse and dense matrix classes, including general, symmetric, triangular, and diagonal matrices with numeric, logical, or pattern entries. Efficient methods for operating on such matrices, often wrapping the 'BLAS', 'LAPACK', and 'SuiteSparse' libraries.",
"License": "GPL (>= 2) | file LICENCE",
"URL": "https://Matrix.R-forge.R-project.org",
"BugReports": "https://R-forge.R-project.org/tracker/?atid=294&group_id=61",
"Contact": "[email protected]",
"Authors@R": "c(person(\"Douglas\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Martin\", \"Maechler\", role = c(\"aut\", \"cre\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Mikael\", \"Jagan\", role = \"aut\", comment = c(ORCID = \"0000-0002-3542-2938\")), person(\"Timothy A.\", \"Davis\", role = \"ctb\", comment = c(ORCID = \"0000-0001-7614-6899\", \"SuiteSparse libraries\", \"collaborators listed in dir(system.file(\\\"doc\\\", \\\"SuiteSparse\\\", package=\\\"Matrix\\\"), pattern=\\\"License\\\", full.names=TRUE, recursive=TRUE)\")), person(\"George\", \"Karypis\", role = \"ctb\", comment = c(ORCID = \"0000-0003-2753-1437\", \"METIS library\", \"Copyright: Regents of the University of Minnesota\")), person(\"Jason\", \"Riedy\", role = \"ctb\", comment = c(ORCID = \"0000-0002-4345-4200\", \"GNU Octave's condest() and onenormest()\", \"Copyright: Regents of the University of California\")), person(\"Jens\", \"Oehlschlägel\", role = \"ctb\", comment = \"initial nearPD()\"), person(\"R Core Team\", role = \"ctb\", comment = c(ROR = \"02zz1nj61\", \"base R's matrix implementation\")))",
"Depends": [
"R (>= 4.4)",
"methods"
],
"Imports": [
"grDevices",
"graphics",
"grid",
"lattice",
"stats",
"utils"
],
"Suggests": [
"MASS",
"datasets",
"sfsmisc",
"tools"
],
"Enhances": [
"SparseM",
"graph"
],
"LazyData": "no",
"LazyDataNote": "not possible, since we use data/*.R and our S4 classes",
"BuildResaveData": "no",
"Encoding": "UTF-8",
"NeedsCompilation": "yes",
"Author": "Douglas Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Martin Maechler [aut, cre] (<https://orcid.org/0000-0002-8685-9910>), Mikael Jagan [aut] (<https://orcid.org/0000-0002-3542-2938>), Timothy A. Davis [ctb] (<https://orcid.org/0000-0001-7614-6899>, SuiteSparse libraries, collaborators listed in dir(system.file(\"doc\", \"SuiteSparse\", package=\"Matrix\"), pattern=\"License\", full.names=TRUE, recursive=TRUE)), George Karypis [ctb] (<https://orcid.org/0000-0003-2753-1437>, METIS library, Copyright: Regents of the University of Minnesota), Jason Riedy [ctb] (<https://orcid.org/0000-0002-4345-4200>, GNU Octave's condest() and onenormest(), Copyright: Regents of the University of California), Jens Oehlschlägel [ctb] (initial nearPD()), R Core Team [ctb] (02zz1nj61, base R's matrix implementation)",
"Maintainer": "Martin Maechler <[email protected]>",
"Repository": "CRAN"
},
"MatrixModels": {
"Package": "MatrixModels",
"Version": "0.5-3",
"Source": "Repository",
"Date": "2023-11-06",
"Title": "Modelling with Sparse and Dense Matrices",
"Author": "Douglas Bates <[email protected]> and Martin Maechler <[email protected]>",
"Maintainer": "Martin Maechler <[email protected]>",
"Contact": "[email protected]",
"Description": "Modelling with sparse and dense 'Matrix' matrices, using modular prediction and response module classes.",
"Depends": [
"R (>= 3.6.0)"
],
"Imports": [
"stats",
"methods",
"Matrix (>= 1.6-0)"
],
"ImportsNote": "_not_yet_stats4",
"Encoding": "UTF-8",
"LazyLoad": "yes",
"License": "GPL (>= 2)",
"URL": "https://Matrix.R-forge.R-project.org/, https://r-forge.r-project.org/R/?group_id=61",
"BugReports": "https://R-forge.R-project.org/tracker/?func=add&atid=294&group_id=61",
"NeedsCompilation": "no",
"Repository": "CRAN"
},
"PRROC": {
"Package": "PRROC",
"Version": "1.3.1",
"Source": "Repository",
"Type": "Package",
"Title": "Precision-Recall and ROC Curves for Weighted and Unweighted Data",
"Date": "2018-06-19",
"Author": "Jan Grau and Jens Keilwagen",
"Maintainer": "Jan Grau <[email protected]>",
"Description": "Computes the areas under the precision-recall (PR) and ROC curve for weighted (e.g., soft-labeled) and unweighted data. In contrast to other implementations, the interpolation between points of the PR curve is done by a non-linear piecewise function. In addition to the areas under the curves, the curves themselves can also be computed and plotted by a specific S3-method. References: Davis and Goadrich (2006) <doi:10.1145/1143844.1143874>; Keilwagen et al. (2014) <doi:10.1371/journal.pone.0092209>; Grau et al. (2015) <doi:10.1093/bioinformatics/btv153>.",
"License": "GPL-3",
"Suggests": [
"testthat",
"ggplot2",
"ROCR"
],
"NeedsCompilation": "no",
"Repository": "CRAN"
},
"Publish": {
"Package": "Publish",
"Version": "2023.01.17",
"Source": "Repository",
"Type": "Package",
"Title": "Format Output of Various Routines in a Suitable Way for Reports and Publication",
"Description": "A bunch of convenience functions that transform the results of some basic statistical analyses into table format nearly ready for publication. This includes descriptive tables, tables of logistic regression and Cox regression results as well as forest plots.",
"Authors@R": "c(person(\"Thomas A.\", \"Gerds\", role = c(\"aut\", \"cre\"), email = \"[email protected]\"), person(\"Christian\", \"Torp-Pedersen\", role = \"ctb\"), person(\"Klaus\", \"K Holst\", role = \"ctb\"), person(\"Brice\", \"Ozenne\", role = \"aut\", email = \"[email protected]\"))",
"Maintainer": "Thomas A. Gerds <[email protected]>",
"Depends": [
"prodlim (>= 1.5.4)"
],
"Imports": [
"survival (>= 2.38)",
"data.table (>= 1.10.4)",
"lava (>= 1.5.1)",
"multcomp (>= 1.4)"
],
"Suggests": [
"riskRegression (>= 2020.09.07)",
"testthat",
"smcfcs (>= 1.4.1)",
"rms (>= 6.1.0)",
"mitools (>= 2.4)",
"nlme (>= 3.1-131)"
],
"License": "GPL (>= 2)",
"RoxygenNote": "7.2.1",
"NeedsCompilation": "no",
"Author": "Thomas A. Gerds [aut, cre], Christian Torp-Pedersen [ctb], Klaus K Holst [ctb], Brice Ozenne [aut]",
"Repository": "CRAN"
},
"R6": {
"Package": "R6",
"Version": "2.6.1",
"Source": "Repository",
"Title": "Encapsulated Classes with Reference Semantics",
"Authors@R": "c( person(\"Winston\", \"Chang\", , \"[email protected]\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )",
"Description": "Creates classes with reference semantics, similar to R's built-in reference classes. Compared to reference classes, R6 classes are simpler and lighter-weight, and they are not built on S4 classes so they do not require the methods package. These classes allow public and private members, and they support inheritance, even when the classes are defined in different packages.",
"License": "MIT + file LICENSE",
"URL": "https://r6.r-lib.org, https://github.com/r-lib/R6",
"BugReports": "https://github.com/r-lib/R6/issues",
"Depends": [
"R (>= 3.6)"
],
"Suggests": [
"lobstr",
"testthat (>= 3.0.0)"
],
"Config/Needs/website": "tidyverse/tidytemplate, ggplot2, microbenchmark, scales",
"Config/testthat/edition": "3",
"Encoding": "UTF-8",
"RoxygenNote": "7.3.2",
"NeedsCompilation": "no",
"Author": "Winston Chang [aut, cre], Posit Software, PBC [cph, fnd]",
"Maintainer": "Winston Chang <[email protected]>",
"Repository": "CRAN"
},
"RColorBrewer": {
"Package": "RColorBrewer",
"Version": "1.1-3",
"Source": "Repository",
"Date": "2022-04-03",
"Title": "ColorBrewer Palettes",
"Authors@R": "c(person(given = \"Erich\", family = \"Neuwirth\", role = c(\"aut\", \"cre\"), email = \"[email protected]\"))",
"Author": "Erich Neuwirth [aut, cre]",
"Maintainer": "Erich Neuwirth <[email protected]>",
"Depends": [
"R (>= 2.0.0)"
],
"Description": "Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.",
"License": "Apache License 2.0",
"NeedsCompilation": "no",
"Repository": "CRAN"
},
"Rcpp": {
"Package": "Rcpp",
"Version": "1.0.14",
"Source": "Repository",
"Title": "Seamless R and C++ Integration",
"Date": "2025-01-11",
"Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"JJ\", \"Allaire\", role = \"aut\", comment = c(ORCID = \"0000-0003-0174-9868\")), person(\"Kevin\", \"Ushey\", role = \"aut\", comment = c(ORCID = \"0000-0003-2880-7407\")), person(\"Qiang\", \"Kou\", role = \"aut\", comment = c(ORCID = \"0000-0001-6786-5453\")), person(\"Nathan\", \"Russell\", role = \"aut\"), person(\"Iñaki\", \"Ucar\", role = \"aut\", comment = c(ORCID = \"0000-0001-6403-5550\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"John\", \"Chambers\", role = \"aut\"))",
"Description": "The 'Rcpp' package provides R functions as well as C++ classes which offer a seamless integration of R and C++. Many R data types and objects can be mapped back and forth to C++ equivalents which facilitates both writing of new code as well as easier integration of third-party libraries. Documentation about 'Rcpp' is provided by several vignettes included in this package, via the 'Rcpp Gallery' site at <https://gallery.rcpp.org>, the paper by Eddelbuettel and Francois (2011, <doi:10.18637/jss.v040.i08>), the book by Eddelbuettel (2013, <doi:10.1007/978-1-4614-6868-4>) and the paper by Eddelbuettel and Balamuta (2018, <doi:10.1080/00031305.2017.1375990>); see 'citation(\"Rcpp\")' for details.",
"Imports": [
"methods",
"utils"
],
"Suggests": [
"tinytest",
"inline",
"rbenchmark",
"pkgKitten (>= 0.1.2)"
],
"URL": "https://www.rcpp.org, https://dirk.eddelbuettel.com/code/rcpp.html, https://github.com/RcppCore/Rcpp",
"License": "GPL (>= 2)",
"BugReports": "https://github.com/RcppCore/Rcpp/issues",
"MailingList": "[email protected]",
"RoxygenNote": "6.1.1",
"Encoding": "UTF-8",
"NeedsCompilation": "yes",
"Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (<https://orcid.org/0000-0002-2444-4226>), JJ Allaire [aut] (<https://orcid.org/0000-0003-0174-9868>), Kevin Ushey [aut] (<https://orcid.org/0000-0003-2880-7407>), Qiang Kou [aut] (<https://orcid.org/0000-0001-6786-5453>), Nathan Russell [aut], Iñaki Ucar [aut] (<https://orcid.org/0000-0001-6403-5550>), Doug Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), John Chambers [aut]",
"Maintainer": "Dirk Eddelbuettel <[email protected]>",
"Repository": "CRAN"
},
"RcppArmadillo": {
"Package": "RcppArmadillo",
"Version": "14.2.3-1",
"Source": "Repository",
"Type": "Package",
"Title": "'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library",
"Date": "2025-02-05",
"Authors@R": "c(person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Binxiang\", \"Ni\", role = \"aut\"), person(\"Conrad\", \"Sanderson\", role = \"aut\", comment = c(ORCID = \"0000-0002-0049-4501\")))",
"Description": "'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
"License": "GPL (>= 2)",
"LazyLoad": "yes",
"Depends": [
"R (>= 3.3.0)"
],
"LinkingTo": [
"Rcpp"
],
"Imports": [
"Rcpp (>= 1.0.12)",
"stats",
"utils",
"methods"
],
"Suggests": [
"tinytest",
"Matrix (>= 1.3.0)",
"pkgKitten",
"reticulate",
"slam"
],
"URL": "https://github.com/RcppCore/RcppArmadillo, https://dirk.eddelbuettel.com/code/rcpp.armadillo.html",
"BugReports": "https://github.com/RcppCore/RcppArmadillo/issues",
"RoxygenNote": "6.0.1",
"NeedsCompilation": "yes",
"Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (<https://orcid.org/0000-0002-2444-4226>), Doug Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Binxiang Ni [aut], Conrad Sanderson [aut] (<https://orcid.org/0000-0002-0049-4501>)",
"Maintainer": "Dirk Eddelbuettel <[email protected]>",
"Repository": "CRAN"
},
"RcppEigen": {
"Package": "RcppEigen",
"Version": "0.3.4.0.2",
"Source": "Repository",
"Type": "Package",
"Title": "'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library",
"Date": "2024-08-23",
"Authors@R": "c(person(\"Doug\", \"Bates\", role = \"aut\", comment = c(ORCID = \"0000-0001-8316-9503\")), person(\"Dirk\", \"Eddelbuettel\", role = c(\"aut\", \"cre\"), email = \"[email protected]\", comment = c(ORCID = \"0000-0001-6419-907X\")), person(\"Romain\", \"Francois\", role = \"aut\", comment = c(ORCID = \"0000-0002-2444-4226\")), person(\"Yixuan\", \"Qiu\", role = \"aut\", comment = c(ORCID = \"0000-0003-0109-6692\")), person(\"Authors of\", \"Eigen\", role = \"cph\", comment = \"Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS\"))",
"Copyright": "See the file COPYRIGHTS for various Eigen copyright details",
"Description": "R and 'Eigen' integration using 'Rcpp'. 'Eigen' is a C++ template library for linear algebra: matrices, vectors, numerical solvers and related algorithms. It supports dense and sparse matrices on integer, floating point and complex numbers, decompositions of such matrices, and solutions of linear systems. Its performance on many algorithms is comparable with some of the best implementations based on 'Lapack' and level-3 'BLAS'. The 'RcppEigen' package includes the header files from the 'Eigen' C++ template library. Thus users do not need to install 'Eigen' itself in order to use 'RcppEigen'. Since version 3.1.1, 'Eigen' is licensed under the Mozilla Public License (version 2); earlier version were licensed under the GNU LGPL version 3 or later. 'RcppEigen' (the 'Rcpp' bindings/bridge to 'Eigen') is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'.",
"License": "GPL (>= 2) | file LICENSE",
"LazyLoad": "yes",
"Depends": [
"R (>= 3.6.0)"
],
"LinkingTo": [
"Rcpp"
],
"Imports": [
"Rcpp (>= 0.11.0)",
"stats",
"utils"
],
"Suggests": [
"Matrix",
"inline",
"tinytest",
"pkgKitten",
"microbenchmark"
],
"URL": "https://github.com/RcppCore/RcppEigen, https://dirk.eddelbuettel.com/code/rcpp.eigen.html",
"BugReports": "https://github.com/RcppCore/RcppEigen/issues",
"NeedsCompilation": "yes",
"Author": "Doug Bates [aut] (<https://orcid.org/0000-0001-8316-9503>), Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Romain Francois [aut] (<https://orcid.org/0000-0002-2444-4226>), Yixuan Qiu [aut] (<https://orcid.org/0000-0003-0109-6692>), Authors of Eigen [cph] (Authorship and copyright in included Eigen library as detailed in inst/COPYRIGHTS)",
"Maintainer": "Dirk Eddelbuettel <[email protected]>",
"Repository": "CRAN"
},
"RcppTOML": {
"Package": "RcppTOML",
"Version": "0.2.2",
"Source": "Repository",
"Type": "Package",
"Title": "'Rcpp' Bindings to Parser for \"Tom's Obvious Markup Language\"",
"Date": "2023-01-29",
"Author": "Dirk Eddelbuettel",
"Maintainer": "Dirk Eddelbuettel <[email protected]>",
"Description": "The configuration format defined by 'TOML' (which expands to \"Tom's Obvious Markup Language\") specifies an excellent format (described at <https://toml.io/en/>) suitable for both human editing as well as the common uses of a machine-readable format. This package uses 'Rcpp' to connect to the 'toml++' parser written by Mark Gillard to R.",
"SystemRequirements": "A C++17 compiler",
"BugReports": "https://github.com/eddelbuettel/rcpptoml/issues",
"URL": "http://dirk.eddelbuettel.com/code/rcpp.toml.html",
"Imports": [
"Rcpp (>= 0.11.5)"
],
"Depends": [
"R (>= 3.3.0)"
],
"LinkingTo": [
"Rcpp"
],
"Suggests": [
"tinytest"
],
"License": "GPL (>= 2)",
"NeedsCompilation": "yes",
"Repository": "CRAN"
},
"SQUAREM": {
"Package": "SQUAREM",
"Version": "2021.1",
"Source": "Repository",
"Date": "2021-01-12",
"Title": "Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms",
"Description": "Algorithms for accelerating the convergence of slow, monotone sequences from smooth, contraction mapping such as the EM algorithm. It can be used to accelerate any smooth, linearly convergent acceleration scheme. A tutorial style introduction to this package is available in a vignette on the CRAN download page or, when the package is loaded in an R session, with vignette(\"SQUAREM\"). Refer to the J Stat Software article: <doi:10.18637/jss.v092.i07>.",
"Depends": [
"R (>= 3.0)"
],
"Suggests": [
"setRNG"
],
"LazyLoad": "yes",
"License": "GPL (>= 2)",
"Author": "Ravi Varadhan",
"Maintainer": "Ravi Varadhan <[email protected]>",
"URL": "https://coah.jhu.edu/people/Faculty_personal_Pages/Varadhan.html",
"Repository": "CRAN",
"NeedsCompilation": "no"
},
"SparseM": {
"Package": "SparseM",
"Version": "1.84-2",
"Source": "Repository",
"Authors@R": "c( person(\"Roger\", \"Koenker\", role = c(\"cre\",\"aut\"), email = \"[email protected]\"), person(c(\"Pin\", \"Tian\"), \"Ng\", role = c(\"ctb\"), comment = \"Contributions to Sparse QR code\", email = \"[email protected]\") , person(\"Yousef\", \"Saad\", role = c(\"ctb\"), comment = \"author of sparskit2\") , person(\"Ben\", \"Shaby\", role = c(\"ctb\"), comment = \"author of chol2csr\") , person(\"Martin\", \"Maechler\", role = \"ctb\", comment = c(\"chol() tweaks; S4\", ORCID = \"0000-0002-8685-9910\")) )",
"Maintainer": "Roger Koenker <[email protected]>",
"Depends": [
"R (>= 2.15)",
"methods"
],
"Imports": [
"graphics",
"stats",
"utils"
],
"VignetteBuilder": "knitr",
"Suggests": [
"knitr"
],
"Description": "Some basic linear algebra functionality for sparse matrices is provided: including Cholesky decomposition and backsolving as well as standard R subsetting and Kronecker products.",
"License": "GPL (>= 2)",
"Title": "Sparse Linear Algebra",
"URL": "http://www.econ.uiuc.edu/~roger/research/sparse/sparse.html",
"NeedsCompilation": "yes",
"Author": "Roger Koenker [cre, aut], Pin Tian Ng [ctb] (Contributions to Sparse QR code), Yousef Saad [ctb] (author of sparskit2), Ben Shaby [ctb] (author of chol2csr), Martin Maechler [ctb] (chol() tweaks; S4, <https://orcid.org/0000-0002-8685-9910>)",
"Repository": "CRAN"
},
"TH.data": {
"Package": "TH.data",
"Version": "1.1-3",
"Source": "Repository",
"Title": "TH's Data Archive",
"Date": "2025-01-17",
"Authors@R": "c(person(\"Torsten\", \"Hothorn\", role = c(\"aut\", \"cre\"), email = \"[email protected]\"))",
"Description": "Contains data sets used in other packages Torsten Hothorn maintains.",
"Depends": [
"R (>= 3.5.0)",
"survival",
"MASS"
],
"Suggests": [
"trtf",
"tram",
"rms",
"coin",
"ATR",
"multcomp",
"gridExtra",
"vcd",
"colorspace",
"lattice",
"knitr"
],
"LazyData": "yes",
"VignetteBuilder": "knitr",
"License": "GPL-3",
"NeedsCompilation": "no",
"Author": "Torsten Hothorn [aut, cre]",
"Maintainer": "Torsten Hothorn <[email protected]>",
"Repository": "CRAN"
},
"actuar": {
"Package": "actuar",
"Version": "3.3-5",
"Source": "Repository",
"Type": "Package",
"Title": "Actuarial Functions and Heavy Tailed Distributions",
"Date": "2025-01-09",
"Authors@R": "c(person(\"Vincent\", \"Goulet\", role = c(\"cre\", \"aut\"), email = \"[email protected]\"), person(\"Sébastien\", \"Auclair\", role = \"ctb\"), person(\"Christophe\", \"Dutang\", role = \"aut\", email = \"[email protected]\"), person(\"Walter\", \"Garcia-Fontes\", role = \"ctb\", email = \"[email protected]\"), person(\"Nicholas\", \"Langevin\", role = \"ctb\"), person(\"Xavier\", \"Milhaud\", role = \"ctb\"), person(\"Tommy\", \"Ouellet\", role = \"ctb\"), person(\"Alexandre\", \"Parent\", role = \"ctb\"), person(\"Mathieu\", \"Pigeon\", role = \"aut\", email = \"[email protected]\"), person(\"Louis-Philippe\", \"Pouliot\", role = \"ctb\"), person(\"Jeffrey A.\", \"Ryan\", role = \"aut\", email = \"[email protected]\", comment = \"Package API\"), person(\"Robert\", \"Gentleman\", role = \"aut\", comment = \"Parts of the R to C interface\"), person(\"Ross\", \"Ihaka\", role = \"aut\", comment = \"Parts of the R to C interface\"), person(family = \"R Core Team\", role = \"aut\", comment = \"Parts of the R to C interface\"), person(family = \"R Foundation\", role = \"aut\", comment = \"Parts of the R to C interface\"))",
"Description": "Functions and data sets for actuarial science: modeling of loss distributions; risk theory and ruin theory; simulation of compound models, discrete mixtures and compound hierarchical models; credibility theory. Support for many additional probability distributions to model insurance loss size and frequency: 23 continuous heavy tailed distributions; the Poisson-inverse Gaussian discrete distribution; zero-truncated and zero-modified extensions of the standard discrete distributions. Support for phase-type distributions commonly used to compute ruin probabilities. Main reference: <doi:10.18637/jss.v025.i07>. Implementation of the Feller-Pareto family of distributions: <doi:10.18637/jss.v103.i06>.",
"Depends": [
"R (>= 4.1.0)"
],
"Imports": [
"stats",
"graphics",
"expint"
],
"LinkingTo": [
"expint"
],
"Suggests": [
"MASS"
],
"License": "GPL (>= 2)",
"URL": "https://gitlab.com/vigou3/actuar",
"BugReports": "https://gitlab.com/vigou3/actuar/-/issues",
"Encoding": "UTF-8",
"LazyData": "yes",
"Classification/MSC-2010": "62P05, 91B30, 62G32",
"NeedsCompilation": "yes",
"Author": "Vincent Goulet [cre, aut], Sébastien Auclair [ctb], Christophe Dutang [aut], Walter Garcia-Fontes [ctb], Nicholas Langevin [ctb], Xavier Milhaud [ctb], Tommy Ouellet [ctb], Alexandre Parent [ctb], Mathieu Pigeon [aut], Louis-Philippe Pouliot [ctb], Jeffrey A. Ryan [aut] (Package API), Robert Gentleman [aut] (Parts of the R to C interface), Ross Ihaka [aut] (Parts of the R to C interface), R Core Team [aut] (Parts of the R to C interface), R Foundation [aut] (Parts of the R to C interface)",
"Maintainer": "Vincent Goulet <[email protected]>",
"Repository": "CRAN"
},
"aorsf": {
"Package": "aorsf",
"Version": "0.1.5.9001",
"Source": "GitHub",
"Title": "Accelerated Oblique Random Forests",
"Authors@R": "c( person(\"Byron\", \"Jaeger\", , \"[email protected]\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0001-7399-2299\")), person(\"Nicholas\", \"Pajewski\", role = \"ctb\"), person(\"Sawyer\", \"Welden\", , \"[email protected]\", role = \"ctb\"), person(\"Christopher\", \"Jackson\", , \"[email protected]\", role = \"rev\"), person(\"Marvin\", \"Wright\", role = \"rev\"), person(\"Lukas\", \"Burk\", role = \"rev\") )",
"Description": "Fit, interpret, and compute predictions with oblique random forests. Includes support for partial dependence, variable importance, passing customized functions for variable importance and identification of linear combinations of features. Methods for the oblique random survival forest are described in Jaeger et al., (2023) <DOI:10.1080/10618600.2023.2231048>.",
"License": "MIT + file LICENSE",
"URL": "https://github.com/ropensci/aorsf, https://docs.ropensci.org/aorsf/",
"BugReports": "https://github.com/ropensci/aorsf/issues/",
"Depends": [
"R (>= 3.6)"
],
"Imports": [
"collapse",
"data.table",
"lifecycle",
"R6",
"Rcpp",
"utils"
],
"Suggests": [
"covr",
"ggplot2",
"glmnet",
"knitr",
"rmarkdown",
"survival",
"SurvMetrics",
"testthat (>= 3.0.0)",
"tibble",
"units"
],
"LinkingTo": [
"Rcpp",
"RcppArmadillo"
],
"VignetteBuilder": "knitr",
"Config/testthat/edition": "3",
"Encoding": "UTF-8",
"LazyData": "true",
"Roxygen": "list(markdown = TRUE)",
"RoxygenNote": "7.3.2",
"RemoteType": "github",
"RemoteHost": "api.github.com",
"RemoteRepo": "aorsf",
"RemoteUsername": "ropensci",
"RemotePkgRef": "ropensci/aorsf",
"RemoteRef": "HEAD",
"RemoteSha": "9d35910ef30b068fa2a16776e0772666650e72d2",
"NeedsCompilation": "yes",
"Author": "Byron Jaeger [aut, cre] (<https://orcid.org/0000-0001-7399-2299>), Nicholas Pajewski [ctb], Sawyer Welden [ctb], Christopher Jackson [rev], Marvin Wright [rev], Lukas Burk [rev]",
"Maintainer": "Byron Jaeger <[email protected]>"
},
"assertthat": {
"Package": "assertthat",
"Version": "0.2.1",
"Source": "Repository",
"Title": "Easy Pre and Post Assertions",
"Authors@R": "person(\"Hadley\", \"Wickham\", , \"[email protected]\", c(\"aut\", \"cre\"))",
"Description": "An extension to stopifnot() that makes it easy to declare the pre and post conditions that you code should satisfy, while also producing friendly error messages so that your users know what's gone wrong.",
"License": "GPL-3",
"Imports": [
"tools"
],
"Suggests": [
"testthat",
"covr"
],
"RoxygenNote": "6.0.1",
"Collate": "'assert-that.r' 'on-failure.r' 'assertions-file.r' 'assertions-scalar.R' 'assertions.r' 'base.r' 'base-comparison.r' 'base-is.r' 'base-logical.r' 'base-misc.r' 'utils.r' 'validate-that.R'",
"NeedsCompilation": "no",
"Author": "Hadley Wickham [aut, cre]",
"Maintainer": "Hadley Wickham <[email protected]>",
"Repository": "CRAN"
},
"backports": {
"Package": "backports",
"Version": "1.5.0",
"Source": "Repository",
"Type": "Package",
"Title": "Reimplementations of Functions Introduced Since R-3.0.0",
"Authors@R": "c( person(\"Michel\", \"Lang\", NULL, \"[email protected]\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Duncan\", \"Murdoch\", NULL, \"[email protected]\", role = c(\"aut\")), person(\"R Core Team\", role = \"aut\"))",
"Maintainer": "Michel Lang <[email protected]>",
"Description": "Functions introduced or changed since R v3.0.0 are re-implemented in this package. The backports are conditionally exported in order to let R resolve the function name to either the implemented backport, or the respective base version, if available. Package developers can make use of new functions or arguments by selectively importing specific backports to support older installations.",
"URL": "https://github.com/r-lib/backports",
"BugReports": "https://github.com/r-lib/backports/issues",
"License": "GPL-2 | GPL-3",
"NeedsCompilation": "yes",
"ByteCompile": "yes",
"Depends": [
"R (>= 3.0.0)"
],
"Encoding": "UTF-8",
"RoxygenNote": "7.3.1",
"Author": "Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>), Duncan Murdoch [aut], R Core Team [aut]",
"Repository": "CRAN"
},
"base64enc": {
"Package": "base64enc",
"Version": "0.1-3",
"Source": "Repository",
"Title": "Tools for base64 encoding",
"Author": "Simon Urbanek <[email protected]>",
"Maintainer": "Simon Urbanek <[email protected]>",
"Depends": [
"R (>= 2.9.0)"
],
"Enhances": [
"png"
],
"Description": "This package provides tools for handling base64 encoding. It is more flexible than the orphaned base64 package.",
"License": "GPL-2 | GPL-3",
"URL": "http://www.rforge.net/base64enc",
"NeedsCompilation": "yes",
"Repository": "CRAN"
},
"base64url": {
"Package": "base64url",
"Version": "1.4",
"Source": "Repository",
"Type": "Package",
"Title": "Fast and URL-Safe Base64 Encoder and Decoder",
"Authors@R": "c( person(\"Michel\", \"Lang\", NULL, \"[email protected]\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0001-9754-0393\")), person(NULL, \"Apache Foundation\", NULL, NULL, role = c(\"ctb\", \"cph\")), person(NULL, \"Free Software Foundation\", NULL, NULL, role = c(\"ctb\", \"cph\")) )",
"Description": "In contrast to RFC3548, the 62nd character (\"+\") is replaced with \"-\", the 63rd character (\"/\") is replaced with \"_\". Furthermore, the encoder does not fill the string with trailing \"=\". The resulting encoded strings comply to the regular expression pattern \"[A-Za-z0-9_-]\" and thus are safe to use in URLs or for file names. The package also comes with a simple base32 encoder/decoder suited for case insensitive file systems.",
"URL": "https://github.com/mllg/base64url",
"BugReports": "https://github.com/mllg/base64url/issues",
"NeedsCompilation": "yes",
"License": "GPL-3",
"Encoding": "UTF-8",
"Imports": [
"backports (>= 1.1.0)"
],
"Suggests": [
"base64enc",
"checkmate",
"knitr",
"microbenchmark",
"openssl",
"rmarkdown",
"testthat"
],
"RoxygenNote": "6.0.1",
"VignetteBuilder": "knitr",
"Author": "Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>), Apache Foundation [ctb, cph], Free Software Foundation [ctb, cph]",
"Maintainer": "Michel Lang <[email protected]>",
"Repository": "CRAN"
},
"batchtools": {
"Package": "batchtools",
"Version": "0.9.17",
"Source": "Repository",
"Title": "Tools for Computation on Batch Systems",
"Authors@R": "c( person(\"Michel\", \"Lang\", NULL, \"[email protected]\", role = c(\"cre\", \"aut\"), comment = c(ORCID = \"0000-0001-9754-0393\")), person(\"Bernd\", \"Bischl\", NULL, \"[email protected]\", role = \"aut\"), person(\"Dirk\", \"Surmann\", NULL, \"[email protected]\", role = \"ctb\", comment = c(ORCID = \"0000-0003-0873-137X\")) )",
"Description": "As a successor of the packages 'BatchJobs' and 'BatchExperiments', this package provides a parallel implementation of the Map function for high performance computing systems managed by schedulers 'IBM Spectrum LSF' (<https://www.ibm.com/products/hpc-workload-management>), 'OpenLava' (<https://www.openlava.org/>), 'Univa Grid Engine'/'Oracle Grid Engine' (<https://www.univa.com/>), 'Slurm' (<https://slurm.schedmd.com/>), 'TORQUE/PBS' (<https://adaptivecomputing.com/cherry-services/torque-resource-manager/>), or 'Docker Swarm' (<https://docs.docker.com/engine/swarm/>). A multicore and socket mode allow the parallelization on a local machines, and multiple machines can be hooked up via SSH to create a makeshift cluster. Moreover, the package provides an abstraction mechanism to define large-scale computer experiments in a well-organized and reproducible way.",
"License": "LGPL-3",
"URL": "https://github.com/mllg/batchtools",
"BugReports": "https://github.com/mllg/batchtools/issues",
"NeedsCompilation": "yes",
"ByteCompile": "yes",
"Encoding": "UTF-8",
"Depends": [
"R (>= 3.0.0)"
],
"Imports": [
"backports (>= 1.1.2)",
"base64url (>= 1.1)",
"brew",
"checkmate (>= 1.8.5)",
"data.table (>= 1.11.2)",
"digest (>= 0.6.9)",
"fs (>= 1.2.0)",
"parallel",
"progress (>= 1.1.1)",
"R6",
"rappdirs",
"stats",
"stringi",
"utils",
"withr (>= 2.0.0)"
],
"Suggests": [
"debugme",
"doParallel",
"doMPI",
"e1071",
"foreach",
"future",
"future.batchtools",
"knitr",
"parallelMap",
"ranger",
"rmarkdown",
"rpart",
"snow",
"testthat",
"tibble"
],
"VignetteBuilder": "knitr",
"RoxygenNote": "7.2.3",
"Author": "Michel Lang [cre, aut] (<https://orcid.org/0000-0001-9754-0393>), Bernd Bischl [aut], Dirk Surmann [ctb] (<https://orcid.org/0000-0003-0873-137X>)",
"Maintainer": "Michel Lang <[email protected]>",
"Repository": "CRAN"
},
"bbmle": {
"Package": "bbmle",
"Version": "1.0.25.1",
"Source": "Repository",
"Title": "Tools for General Maximum Likelihood Estimation",
"Description": "Methods and functions for fitting maximum likelihood models in R. This package modifies and extends the 'mle' classes in the 'stats4' package.",
"Authors@R": "c(person(\"Ben\",\"Bolker\",email=\"[email protected]\",role=c(\"aut\",\"cre\"), comment=c(ORCID=\"0000-0002-2127-0443\")), person(\"R Development Core Team\",role=c(\"aut\")), person(\"Iago Giné-Vázquez\", role=c(\"ctb\")) )",
"Depends": [
"R (>= 3.0.0)",
"stats4"
],
"Imports": [
"stats",
"numDeriv",
"lattice",
"MASS",
"methods",
"bdsmatrix",
"Matrix",
"mvtnorm"
],