From 5224c5ada55e748d78afec83f81f2ce885db504f Mon Sep 17 00:00:00 2001
From: Andrew D Smith <andrewds@usc.edu>
Date: Sun, 30 Jun 2024 16:01:26 -0700
Subject: [PATCH] src/utils/kmersites.cpp: Changing the default offset value to
 1 because the input data will be 0-based and dynamic step wig is assumed to
 be 1-based for the ucsc tools, particularly wigToBigWig

---
 src/utils/kmersites.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/utils/kmersites.cpp b/src/utils/kmersites.cpp
index 542751ea..afd68beb 100644
--- a/src/utils/kmersites.cpp
+++ b/src/utils/kmersites.cpp
@@ -110,7 +110,7 @@ kmersites(const int argc, const char **argv) -> int {
     string kmer = "CG";
     string outfile;
     // int n_threads = 1;
-    int offset = 0;
+    int offset = 1;
 
     /****************** COMMAND LINE OPTIONS ********************/
     OptionParser opt_parse(fs::path(string(*argv)).filename(),