v0.2.1 - 2019/12/12

This release gets rid of the template.html file in the Configuration directory. An html template is no longer required for the program to run. Major changes in the source code also make it more readable. All "magic" constants used throughout the program are centralized in the Constants namespace in the FalcoConfig.hpp file.

v0.2 - 2019/11/26

Changes in version 0.2:

• Fixed several problems in per tile sequence quality. Visualization in the html report also shows the y axis in heatmap as categorical instead of numeric.
• Fixed bugs in adapter content. We now give an exact percentage of adapters in each position, and output is consistent with FastQC.
• Base groups in per base sequence quality are more consistent with FastQC. We now use linear base groups instead of exponential base groups from previous version.
• Added a -B or --bisulfite flag, not included in fastqc, to test for Whole Genome Bisulfite Sequencing data. When the -B flag is raised, per base sequence content will only compare A with G and (A+T) with (G+C) as pass/warn/fail criteria. It will also display two extra columns in the text output with A+T and G+C percentages for each base position.
• Added a -v or --version flag similar to FastQC, which simply prints the program version.

v0.1.1 - 2019/11/21

Changelog:

• Updated documentation, -O3 flag is instructed to be default when running ./configure
• benchmark directory no longer added to the tarball

v0.1 - 2019/10/28

Accurate adapter estimator just from kmer counts