run_no_segm.pbs

#!/usr/bin/env bash

#PBS -l nodes=1:ppn=4
#PBS -l walltime=24:00:00
#PBS -l mem=64gb
#PBS -m ae
#PBS -M simon.bil@ugent.be

cd dp/Vizgen

mkdir output_no_segm

# disable lazy load as it seems to cause world age issues
export LazyModules_lazyload=false

# wo plotting as it seems to cause errors?
# TODO: investigate?
./baysor run -c ./merfish.toml -o ./output_no_segm ./data/subset_transcripts.csv