Setup.sh needed numpy and cython>=0.22 dependencies

[ghar1821]

Hi there,

The setup.sh file gave me an error at step 3. I think one of the packages (pystan) installed using pip required numpy and cython>=0.22, and it couldn't find it. I thought adding the 2 packages to dependencies would resolve the problem. Alas, not quite. The only way i managed to resolve is by installing pystan using conda,

Error message below:

error: subprocess-exited-with-error
  
  × Preparing metadata (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [1 lines of output]
      Cython>=0.22 and NumPy are required.
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> pystan

note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
critical libmamba pip failed to update packages
Error: Failed to install core bioinformatics tools.