diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 7b5c4676..12ecdfaa 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -7,11 +7,11 @@ default_stages: minimum_pre_commit_version: 2.16.0 repos: - repo: https://github.com/biomejs/pre-commit - rev: v2.3.10 + rev: v2.4.6 hooks: - id: biome-format - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.14.11 + rev: v0.15.5 hooks: - id: ruff-check args: [--fix, --exit-non-zero-on-fix, --unsafe-fixes] diff --git a/biomni/tool/cancer_biology.py b/biomni/tool/cancer_biology.py index c512bbea..4824a271 100644 --- a/biomni/tool/cancer_biology.py +++ b/biomni/tool/cancer_biology.py @@ -1233,8 +1233,9 @@ def norm_chr(x): r_end = r["end"] r_start = r["start"] overlaps["ov_len"] = overlaps.apply( - lambda row, r_end=r_end, r_start=r_start: min(row[end_col], r_end) - - max(row[start_col], r_start), + lambda row, r_end=r_end, r_start=r_start: ( + min(row[end_col], r_end) - max(row[start_col], r_start) + ), axis=1, ) best = overlaps.sort_values("ov_len", ascending=False).iloc[0]