{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":18203808,"defaultBranch":"devel","name":"xcms","ownerLogin":"sneumann","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2014-03-28T07:03:48.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/195385?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1722936019.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"8f4eac38ebe8002a3a2d734a81f5b904254660eb","ref":"refs/heads/RELEASE_3_19_issue_755","pushedAt":"2024-08-06T09:20:19.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"fix: issue #755 for the RELEASE_3_19 branch\n\n- `chromatogram()` with `msLevel = 2L` extracts by default signal from all\n isolation windows.","shortMessageHtmlLink":"fix: issue #755 for the RELEASE_3_19 branch"}},{"before":null,"after":"986075e72ba925aedc0e3b8a97f87c1ec0476430","ref":"refs/heads/issue_755","pushedAt":"2024-08-06T07:44:56.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"fix: issue #755\n\n- `chromatogram` with `msLevel = 2L` does by default extract chromatographic\n data of all MS2 spectra, independently of whether different m/z isolation\n windows were used. For data with isolation windows, the respective isolation\n window can be set/defined with the `isolationWindowTargetMz` parameter.\n- Update documentation to describe this behaviour better.","shortMessageHtmlLink":"fix: issue #755"}},{"before":"1bd6d3dd88b8f09a06d177733114dc9e07676398","after":"b4ed18b7db2f5e8ebb3dc0f3d29229510f77c782","ref":"refs/heads/jomain","pushedAt":"2024-08-05T11:29:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"fix: coercion from XcmsExperiment to XCMSnExp","shortMessageHtmlLink":"fix: coercion from XcmsExperiment to XCMSnExp"}},{"before":"d0c71d032d9e1044931d358546c29c199e7db348","after":"1bd6d3dd88b8f09a06d177733114dc9e07676398","ref":"refs/heads/jomain","pushedAt":"2024-08-05T09:50:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"fix: fix coercion method from XcmsExperiment to XCMSnExp","shortMessageHtmlLink":"fix: fix coercion method from XcmsExperiment to XCMSnExp"}},{"before":"b9901c40c51bbee726ee4fbb7034d5720ea803ef","after":"d0c71d032d9e1044931d358546c29c199e7db348","ref":"refs/heads/jomain","pushedAt":"2024-08-01T13:04:26.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"ci: remove all manual library installations for macOS","shortMessageHtmlLink":"ci: remove all manual library installations for macOS"}},{"before":"ea3f776db680cbb0a77b0e7d10e6b1765db05229","after":"b9901c40c51bbee726ee4fbb7034d5720ea803ef","ref":"refs/heads/jomain","pushedAt":"2024-07-31T08:51:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"feat: support coercing from XcmsExperiment to XCMSnExp\n\n- Support coercing from `XcmsExperiment` to `XCMSnExp` using\n `setAs(object, \"XCMSnExp\")` (issue #752).","shortMessageHtmlLink":"feat: support coercing from XcmsExperiment to XCMSnExp"}},{"before":"703c7f686ee7b8118fd3c6d95fa7c3ee4e9873dc","after":"ea3f776db680cbb0a77b0e7d10e6b1765db05229","ref":"refs/heads/jomain","pushedAt":"2024-07-30T11:44:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"Merge pull request #757 from sneumann/jomain\n\nrefactor: dump all data export functionality from xcms","shortMessageHtmlLink":"Merge pull request #757 from sneumann/jomain"}},{"before":"ab9061b820ab6cb59bccdc95f7ede8eb88cd570e","after":"cbb218221f97d1cb2ede1258ed344e7f00c6d7f9","ref":"refs/heads/gh-pages","pushedAt":"2024-07-26T09:20:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Built site for xcms@4.3.2: ea3f776","shortMessageHtmlLink":"Built site for xcms@4.3.2: ea3f776"}},{"before":"88bdd81649049dac956572b3a936ff626c235939","after":"ea3f776db680cbb0a77b0e7d10e6b1765db05229","ref":"refs/heads/devel","pushedAt":"2024-07-26T08:01:00.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"sneumann","name":"Steffen Neumann","path":"/sneumann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/195385?s=80&v=4"},"commit":{"message":"Merge pull request #757 from sneumann/jomain\n\nrefactor: dump all data export functionality from xcms","shortMessageHtmlLink":"Merge pull request #757 from sneumann/jomain"}},{"before":"bf2792d14ec9c3d179d6fce405e631d993b748a3","after":null,"ref":"refs/heads/quick_fix","pushedAt":"2024-07-18T11:46:11.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"}},{"before":"9e64c926046647435b8f6f24c04206e905140c82","after":"703c7f686ee7b8118fd3c6d95fa7c3ee4e9873dc","ref":"refs/heads/jomain","pushedAt":"2024-07-18T11:42:20.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"Merge pull request #758 from sneumann/quick_fix\n\nsmall fixes","shortMessageHtmlLink":"Merge pull request #758 from sneumann/quick_fix"}},{"before":"9e64c926046647435b8f6f24c04206e905140c82","after":"bf2792d14ec9c3d179d6fce405e631d993b748a3","ref":"refs/heads/quick_fix","pushedAt":"2024-07-18T11:38:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"small fixes","shortMessageHtmlLink":"small fixes"}},{"before":null,"after":"9e64c926046647435b8f6f24c04206e905140c82","ref":"refs/heads/quick_fix","pushedAt":"2024-07-18T11:28:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"refactor: dump all data export functionality from xcms\n\n- Remove the data export functionality (`saveResults()`) from *xcms* as it will\n be implemented (in a more structured and cleaner way) in the new *MsIO*\n package.","shortMessageHtmlLink":"refactor: dump all data export functionality from xcms"}},{"before":"88bdd81649049dac956572b3a936ff626c235939","after":"9e64c926046647435b8f6f24c04206e905140c82","ref":"refs/heads/jomain","pushedAt":"2024-07-18T08:52:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"refactor: dump all data export functionality from xcms\n\n- Remove the data export functionality (`saveResults()`) from *xcms* as it will\n be implemented (in a more structured and cleaner way) in the new *MsIO*\n package.","shortMessageHtmlLink":"refactor: dump all data export functionality from xcms"}},{"before":"7bb4aee35dda93b4d62d1e3743c87ba5897d1326","after":"a45ff100881c7c781bd1b4d0cdddacab00dab4e2","ref":"refs/heads/phili","pushedAt":"2024-07-18T08:38:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"Update MzTabParam.R","shortMessageHtmlLink":"Update MzTabParam.R"}},{"before":"803bd02953d05a89ddbf96ae1295bc5c0cac90b0","after":"7bb4aee35dda93b4d62d1e3743c87ba5897d1326","ref":"refs/heads/phili","pushedAt":"2024-06-19T09:53:12.000Z","pushType":"push","commitsCount":17,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"Merge branch 'devel' into phili","shortMessageHtmlLink":"Merge branch 'devel' into phili"}},{"before":"386bd40cec306b15a1279787f8cda82e61ccbd45","after":"357448607781d15311fa2d261309e0b2fb35ba2b","ref":"refs/heads/RELEASE_3_19","pushedAt":"2024-06-07T07:34:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"fix: add fix for plot,MsExperiment for LC-MS/MS data\n\n- Add the fix merged with PR #741 into the devel branch also to the release\n branch.\n- The fix addresses the error generated when `plot,MsExperiment` is called on a\n `MsExperiment` with MS1 and MS2 spectra (issue #734).","shortMessageHtmlLink":"fix: add fix for plot,MsExperiment for LC-MS/MS data"}},{"before":"04081446b4e62d38022585f90dcc95e0d1f06455","after":"9d275949cbfc814d445b47e85e3b29b2a565f26c","ref":"refs/heads/import_methods","pushedAt":"2024-06-06T09:53:43.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"Merge pull request #753 from sneumann/import_methods_jo\n\nrefactor: updates of documentation and extension of unit tests","shortMessageHtmlLink":"Merge pull request #753 from sneumann/import_methods_jo"}},{"before":"7157198fd50fcca76c54c5203f90951a4f899da8","after":"99291cbdb47b3d6a46f4f3f4bcdb28fd04b79804","ref":"refs/heads/import_methods_jo","pushedAt":"2024-06-06T05:52:30.000Z","pushType":"push","commitsCount":16,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"refactor: updates of documentation and extension of unit tests\n\n- Small fixes and formatting changes in the code.\n- Expand unit tests to cover additional scenarios.\n- Update/restructure documentation.","shortMessageHtmlLink":"refactor: updates of documentation and extension of unit tests"}},{"before":"6f177fdf1f4592c687d32c3f15c5b114e70a5358","after":"04081446b4e62d38022585f90dcc95e0d1f06455","ref":"refs/heads/import_methods","pushedAt":"2024-06-05T08:14:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"Update test_PlainTextParam.R","shortMessageHtmlLink":"Update test_PlainTextParam.R"}},{"before":"8800b367549abca6369bdaadf047bdba531e49f4","after":"6f177fdf1f4592c687d32c3f15c5b114e70a5358","ref":"refs/heads/import_methods","pushedAt":"2024-06-05T07:22:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"dependency fixes","shortMessageHtmlLink":"dependency fixes"}},{"before":"36ab4c1a9482ef78b7f326711cc109fe2ae66c4a","after":"8800b367549abca6369bdaadf047bdba531e49f4","ref":"refs/heads/import_methods","pushedAt":"2024-06-04T15:15:48.000Z","pushType":"push","commitsCount":11,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"Merge branch 'devel' into import_methods","shortMessageHtmlLink":"Merge branch 'devel' into import_methods"}},{"before":"170e6fd8beb75d14b7613b1c6f2ada114ade3b83","after":"36ab4c1a9482ef78b7f326711cc109fe2ae66c4a","ref":"refs/heads/import_methods","pushedAt":"2024-06-04T14:23:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"restructuration\n\n- method for spectra and MsBackend","shortMessageHtmlLink":"restructuration"}},{"before":"b4a2570576a55ce453f6377c9119afbc80dae94d","after":"ab9061b820ab6cb59bccdc95f7ede8eb88cd570e","ref":"refs/heads/gh-pages","pushedAt":"2024-06-03T16:19:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Built site for xcms@4.3.1: 88bdd81","shortMessageHtmlLink":"Built site for xcms@4.3.1: 88bdd81"}},{"before":"a075df8e56d703c48dc286149df81d5ef6cce8f6","after":"88bdd81649049dac956572b3a936ff626c235939","ref":"refs/heads/devel","pushedAt":"2024-06-03T14:49:30.000Z","pushType":"push","commitsCount":10,"pusher":{"login":"sneumann","name":"Steffen Neumann","path":"/sneumann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/195385?s=80&v=4"},"commit":{"message":"ci: skip installation of netcdf libraries on macOS","shortMessageHtmlLink":"ci: skip installation of netcdf libraries on macOS"}},{"before":"61f86d6f4056264d54c75682b4f8f0ad052dfb3e","after":"170e6fd8beb75d14b7613b1c6f2ada114ade3b83","ref":"refs/heads/import_methods","pushedAt":"2024-05-30T08:11:07.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"Merge pull request #749 from sneumann/import_methods_jo\n\nrefactor: add storeResults/loadResults for Spectra etc","shortMessageHtmlLink":"Merge pull request #749 from sneumann/import_methods_jo"}},{"before":null,"after":"7157198fd50fcca76c54c5203f90951a4f899da8","ref":"refs/heads/import_methods_jo","pushedAt":"2024-05-30T08:04:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"jorainer","name":"Johannes Rainer","path":"/jorainer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/5506112?s=80&v=4"},"commit":{"message":"refactor: add storeResults/loadResults for Spectra etc","shortMessageHtmlLink":"refactor: add storeResults/loadResults for Spectra etc"}},{"before":"350aa22397807cb883cb673359c5db64250acfa2","after":"61f86d6f4056264d54c75682b4f8f0ad052dfb3e","ref":"refs/heads/import_methods","pushedAt":"2024-05-24T10:44:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"Update RDataParam.R","shortMessageHtmlLink":"Update RDataParam.R"}},{"before":"5ea7b2a95962eda746f410ac22e852272c330ee8","after":"350aa22397807cb883cb673359c5db64250acfa2","ref":"refs/heads/import_methods","pushedAt":"2024-05-24T09:11:03.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"lastfixes","shortMessageHtmlLink":"lastfixes"}},{"before":"e753de44a96ffbff0e1684228e53e26f8378f21d","after":"5ea7b2a95962eda746f410ac22e852272c330ee8","ref":"refs/heads/import_methods","pushedAt":"2024-05-23T12:25:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"philouail","name":"Philippine Louail","path":"/philouail","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/127301965?s=80&v=4"},"commit":{"message":"addition of òbject =` and other fix","shortMessageHtmlLink":"addition of òbject =` and other fix"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEkuUUOwA","startCursor":null,"endCursor":null}},"title":"Activity · sneumann/xcms"}