Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

fillChromPeaks: for MS2 chrom peaks: ensure data is integrated from spectra of the correct isolation window #751

Open
jorainer opened this issue Jun 3, 2024 · 0 comments
Open

fillChromPeaks: for MS2 chrom peaks: ensure data is integrated from spectra of the correct isolation window #751

jorainer opened this issue Jun 3, 2024 · 0 comments
Assignees
@jorainer
Labels
swath issues related to the SWATH support in xcms

Comments

@jorainer
Copy link
Collaborator

jorainer commented Jun 3, 2024

For gap filling with fillChromPeaks() on MS2 chrom peaks we have to make sure we're filling in data from MS2 spectra of the correct isolation window too. The chromatograms,XcmsExperiment does that already correctly (by considering the "isolationWindow" spectra variable).

Note: this only applies to DIA LC-MS/MS data that uses isolation windows such as SWATH.
@jorainer jorainer self-assigned this Jun 3, 2024
@jorainer jorainer added the swath issues related to the SWATH support in xcms label Jun 3, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@jorainer jorainer

Labels
swath issues related to the SWATH support in xcms
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@jorainer