From c21e1768d18e3608e6e6d99c97134317e7e41c75 Mon Sep 17 00:00:00 2001 From: Sergey O Date: Thu, 17 Oct 2024 08:42:05 -0400 Subject: [PATCH] adding link to nature protocols --- AlphaFold2.ipynb | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/AlphaFold2.ipynb b/AlphaFold2.ipynb index 4cb18d55..60e35b36 100644 --- a/AlphaFold2.ipynb +++ b/AlphaFold2.ipynb @@ -48,7 +48,8 @@ "\n", "##ColabFold v1.5.5: AlphaFold2 using MMseqs2\n", "\n", - "Easy to use protein structure and complex prediction using [AlphaFold2](https://www.nature.com/articles/s41586-021-03819-2) and [Alphafold2-multimer](https://www.biorxiv.org/content/10.1101/2021.10.04.463034v1). Sequence alignments/templates are generated through [MMseqs2](mmseqs.com) and [HHsearch](https://github.com/soedinglab/hh-suite). For more details, see bottom of the notebook, checkout the [ColabFold GitHub](https://github.com/sokrypton/ColabFold) and read our manuscript.\n", + "Easy to use protein structure and complex prediction using [AlphaFold2](https://www.nature.com/articles/s41586-021-03819-2) and [Alphafold2-multimer](https://www.biorxiv.org/content/10.1101/2021.10.04.463034v1). Sequence alignments/templates are generated through [MMseqs2](mmseqs.com) and [HHsearch](https://github.com/soedinglab/hh-suite). For more details, see bottom of the notebook, checkout the [ColabFold GitHub](https://github.com/sokrypton/ColabFold) and [Nature Protocols](https://www.nature.com/articles/s41596-024-01060-5).\n", + "\n", "Old versions: [v1.4](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.4.0/AlphaFold2.ipynb), [v1.5.1](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.1/AlphaFold2.ipynb), [v1.5.2](https://colab.research.google.com/github/sokrypton/ColabFold/blob/v1.5.2/AlphaFold2.ipynb), [v1.5.3-patch](https://colab.research.google.com/github/sokrypton/ColabFold/blob/56c72044c7d51a311ca99b953a71e552fdc042e1/AlphaFold2.ipynb)\n", "\n", "[Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. ColabFold: Making protein folding accessible to all.\n", @@ -539,6 +540,8 @@ }, "source": [ "# Instructions \n", + "For detailed instructions, tips and tricks, see recently published paper at [Nature Protocols](https://www.nature.com/articles/s41596-024-01060-5)\n", + "\n", "**Quick start**\n", "1. Paste your protein sequence(s) in the input field.\n", "2. Press \"Runtime\" -> \"Run all\".\n",