Custom template issue

[PDEPMC]

Expected Behavior

Trying to predict a structure based on a known PDB structure. After I followed what has been suggested to create cif file on previously reported issue, error message came up "MessageError: RangeError: Maximum call stack size exceeded."

Current Behavior

MessageError: RangeError: Maximum call stack size exceeded after upload edited cif files according to the instruction listed in 2022.

Steps to Reproduce (for bugs)

1n3x.cif(n/a) - 296501 bytes, last modified: n/a - 0% done

MessageError Traceback (most recent call last)
in <cell line: 51>()
55 custom_template_path = os.path.join(jobname,f"template")
56 os.makedirs(custom_template_path, exist_ok=True)
---> 57 uploaded = files.upload()
58 use_templates = True
59 for fn in uploaded.keys():

3 frames
/usr/local/lib/python3.10/dist-packages/google/colab/_message.py in read_reply_from_input(message_id, timeout_sec)
101 ):
102 if 'error' in reply:
--> 103 raise MessageError(reply['error'])
104 return reply.get('data', None)
105

MessageError: RangeError: Maximum call stack size exceeded.

ColabFold Output (for bugs)

1n3x.cif(n/a) - 296501 bytes, last modified: n/a - 0% done

MessageError Traceback (most recent call last)
in <cell line: 51>()
55 custom_template_path = os.path.join(jobname,f"template")
56 os.makedirs(custom_template_path, exist_ok=True)
---> 57 uploaded = files.upload()
58 use_templates = True
59 for fn in uploaded.keys():

3 frames
/usr/local/lib/python3.10/dist-packages/google/colab/_message.py in read_reply_from_input(message_id, timeout_sec)
101 ):
102 if 'error' in reply:
--> 103 raise MessageError(reply['error'])
104 return reply.get('data', None)
105

MessageError: RangeError: Maximum call stack size exceeded.

Context

Tried different pdb files and converted them to

Your Environment

• Operating system and version: MacOS

[milot-mirdita]

This is an issue with Google Colab breaking in Safari. We can't really do much about it. I recommend to use Firefox.

[PDEPMC]

Okay! Will try Firefox in the morning. Thanks, Yuan On Aug 21, 2024, at 1:40 AM, Milot Mirdita ***@***.***> wrote:  This is an issue with Google Colab breaking in Safari. We can't really do much about it. I recommend to use Firefox. — Reply to this email directly, view it on GitHub<#644 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/A22NO3JGWB7UOUP6BFUKWXTZSQR4VAVCNFSM6AAAAABM3HRX5GVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGMBRGE3TGOBQGE>. You are receiving this because you authored the thread.Message ID: ***@***.***>