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MSA on local machine? #650

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GXcells opened this issue Sep 9, 2024 · 1 comment
Open

MSA on local machine? #650

GXcells opened this issue Sep 9, 2024 · 1 comment

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@GXcells
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GXcells commented Sep 9, 2024

Hi I a mrunning colab fold but get this message

"WARNING: You are welcome to use the default MSA server, however keep in mind that it's a
limited shared resource only capable of processing a few thousand MSAs per day. Please
submit jobs only from a single IP address. We reserve the right to limit access to the
server case-by-case when usage exceeds fair use. If you require more MSAs: You can
precompute all MSAs with colabfold_search or host your own API and pass it to --host-url
"

Is there an easy way t do MSA locally and not using this "server"?

@hyejun18
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hyejun18 commented Nov 4, 2024

I think you can do this.
https://github.com/sokrypton/ColabFold/wiki#running-colabfold_search
You can prepare your own MSA db by using commands in this wiki.

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