Initial NMDS ordinations and example diversity statistics for metabarcoding data

This workflow and Jupyter binder shows a basic workflow to visualize metabarcoding data in R.

Quick Start:

Click on the binder link, than click "knit" to make an html R Markdown. You may need to turn off your pop up blocker.

Example Output:

Summary:

This workflow will generate several example NMDS ordinations from an OTU/ASV table.

Please remove taxonomic assignments before using this workflow.

This plot will provide a visual representation of a given sample’s community composition in relation to all other samples. These plots allow you to quickly visualize your metabarcoding community by any metadata grouping (categorical) factor you choose.

Authors:

Jason Rothman

https://orcid.org/0000-0002-4848-8901

Jane Lucas

https://orcid.org/0000-0002-3931-1864

Links

GitHub: https://github.com/jasonarothman/Metabarcoding_viz

Binder:

We hope this is helpful!