slight change to acccomodate empty input

LEBC · LEBC · commit 4fd25cf8d979 · 2025-02-25T16:33:26.000+01:00
diff --git a/bifrost_bridge/_modidx.py b/bifrost_bridge/_modidx.py
@@ -59,4 +59,8 @@
             'bifrost_bridge.quast': { 'bifrost_bridge.quast.process_quast_data': ( 'quast.html#process_quast_data',
                                                                                    'bifrost_bridge/quast.py'),
                                       'bifrost_bridge.quast.process_quast_data_from_cli': ( 'quast.html#process_quast_data_from_cli',
-                                                                                            'bifrost_bridge/quast.py')}}}
+                                                                                            'bifrost_bridge/quast.py')},
+            'bifrost_bridge.rmlst': { 'bifrost_bridge.rmlst.process_rmlst_data': ( 'rmlst.html#process_rmlst_data',
+                                                                                   'bifrost_bridge/rmlst.py'),
+                                      'bifrost_bridge.rmlst.process_rmlst_data_from_cli': ( 'rmlst.html#process_rmlst_data_from_cli',
+                                                                                            'bifrost_bridge/rmlst.py')}}}
diff --git a/bifrost_bridge/rmlst.py b/bifrost_bridge/rmlst.py
@@ -88,7 +88,7 @@ def concatenate_vector(vector: list, sep=",") -> str:
         df.export_data(output_path, file_type="tsv")
     else:
         empty_df = pd.DataFrame(
-            columns=[col.strip() for col in filter_columns.split(",")]
+            columns=[col.strip() for col in replace_header.split(",")]
         )
         empty_df.to_csv(output_path, index=False)
 
diff --git a/nbs/09_rmlst.ipynb b/nbs/09_rmlst.ipynb
@@ -139,7 +139,7 @@
     "\n",
     "        df.export_data(output_path, file_type='tsv')\n",
     "    else:\n",
-    "        empty_df = pd.DataFrame(columns = [col.strip() for col in filter_columns.split(',')])\n",
+    "        empty_df = pd.DataFrame(columns = [col.strip() for col in replace_header.split(',')])\n",
     "        empty_df.to_csv(output_path, index=False)\n",
     "\n",
     "@call_parse\n",

Original file line number	Diff line number	Diff line change
`@@ -88,7 +88,7 @@ def concatenate_vector(vector: list, sep=",") -> str:`
`88`	`88`	`df.export_data(output_path, file_type="tsv")`
`89`	`89`	`else:`
`90`	`90`	`empty_df = pd.DataFrame(`
`91`		`- columns=[col.strip() for col in filter_columns.split(",")]`
	`91`	`+ columns=[col.strip() for col in replace_header.split(",")]`
`92`	`92`	`)`
`93`	`93`	`empty_df.to_csv(output_path, index=False)`
`94`	`94`