minor

Author: PovilasMat

bifrost_bridge/__init__.py

@@ -1 +1 @@
-__version__ = "0.0.1"
+__version__ = "0.0.2"

settings.ini

@@ -1,55 +1,50 @@
 [DEFAULT]
-# All sections below are required unless otherwise specified.
-# See https://github.com/fastai/nbdev/blob/master/settings.ini for examples.
-
-### Python library ###
 repo = bifrost_bridge
-lib_name = %(repo)s
-version = 0.0.1
+lib_name = bifrost_bridge
+version = 0.0.2
 min_python = 3.8
 license = MIT
 black_formatting = True
-
-### nbdev ###
 doc_path = _docs
 lib_path = bifrost_bridge
 nbs_path = nbs
 recursive = True
 tst_flags = notest
 put_version_in_init = True
-
-### Docs ###
 branch = main
 custom_sidebar = False
-doc_host = https://%(user)s.github.io
-doc_baseurl = /%(repo)s
-git_url = https://github.com/%(user)s/%(repo)s
-title = %(lib_name)s
-
-### PyPI ###
+doc_host = https://$GIT_USER_NAME.github.io
+doc_baseurl = /bifrost_bridge
+git_url = https://github.com/$GIT_USER_NAME/bifrost_bridge
+title = bifrost_bridge
 audience = Developers
 author = $GIT_USER_NAME
 author_email = [email protected]
-copyright = 2024 onwards, %(author)s
+copyright = 2024 onwards, $GIT_USER_NAME
 description = TODO
 keywords = nbdev jupyter notebook python
 language = English
 status = 3
 user = $GIT_USER_NAME
 conda_user = PovilasMat
-
-### Optional ###
-# requirements = fastcore pandas
-# dev_requirements = 
 requirements = fastcore
 pip_requirements = python_dotenv envyaml pandas black
 conda_requirements = python-dotenv povilasmat::envyaml pandas black
 console_scripts = 
-    bridge_mlst=bifrost_bridge.mlst:process_mlst_data_from_cli
-    bridge_fastp=bifrost_bridge.fastp:process_fastp_data_from_cli
-    bridge_quast=bifrost_bridge.quast:process_quast_data_from_cli
-    bridge_plasmidfinder=bifrost_bridge.plasmidfinder:process_plasmidfinder_data_from_cli
-    bridge_amrfinderplus=bifrost_bridge.amrfinderplus:process_amrfinderplus_data_from_cli
-    bridge_bracken=bifrost_bracken.bracken:process_bracken_data_from_cli
-    bridge_pmlst=bifrost_bridge.pmlst:process_pmlst_data_from_cli
-    bridge_qc=bifrost_bridge.bifrost:process_qc_data
+	bridge_mlst=bifrost_bridge.mlst:process_mlst_data_from_cli
+	bridge_fastp=bifrost_bridge.fastp:process_fastp_data_from_cli
+	bridge_quast=bifrost_bridge.quast:process_quast_data_from_cli
+	bridge_plasmidfinder=bifrost_bridge.plasmidfinder:process_plasmidfinder_data_from_cli
+	bridge_amrfinderplus=bifrost_bridge.amrfinderplus:process_amrfinderplus_data_from_cli
+	bridge_bracken=bifrost_bridge.bracken:process_bracken_data_from_cli
+	bridge_pmlst=bifrost_bridge.pmlst:process_pmlst_data_from_cli
+	bridge_qc=bifrost_bridge.bifrost:process_qc_data
+readme_nb = index.ipynb
+allowed_metadata_keys = 
+allowed_cell_metadata_keys = 
+jupyter_hooks = False
+clean_ids = True
+clear_all = False
+cell_number = True
+skip_procs = 
+