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Update README.md
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updated easy-search to distinguish complexsearch
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elileka authored Dec 14, 2023
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Expand Up @@ -77,7 +77,7 @@ Many of Foldseek's modules (subprograms) rely on MMseqs2. For more information a
## Quick start

### Search
The `easy-search` module allows to search single or multiple query structures, formatted in PDB/mmCIF format (flat or gzipped), against a target database, folder or single protein structures. The default alignment information output is a [tab-separated file](#tab-separated) but Foldseek also supports [Superposed Cα PDBs](#superpositioned-cα-only-pdb-files) and [HTML](#interactive-html).
The `easy-search` module allows to query one or more single-chain protein structures, formatted in PDB/mmCIF format (flat or gzipped), against a target database, folder or individual single-chain protein structures (for multi-chain proteins see [complexsearch](#complexsearch)). The default alignment information output is a [tab-separated file](#tab-separated) but Foldseek also supports [Superposed Cα PDBs](#superpositioned-cα-only-pdb-files) and [HTML](#interactive-html).

foldseek easy-search example/d1asha_ example/ aln tmpFolder

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