Upload the actual executables #104
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| # Run these tests automatically on Github on every push and pull request. | |
| # Use the macOS operating system, which has 4 cores. | |
| name: Check stella | |
| on: [push, pull_request] | |
| # We always run in a bash shell | |
| defaults: | |
| run: | |
| shell: bash | |
| # First build stella, and then perform python tests | |
| jobs: | |
| #----------------------------------------------------------------------- | |
| # Build stella on different operating systems | |
| #----------------------------------------------------------------------- | |
| build-stella: | |
| # Set environment variables | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| # Run the same set-up multiple times | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-12, macos-13, macos-14, ubuntu-20.04, ubuntu-22.04, ubuntu-24.04] | |
| compiler: [Make, CMake] | |
| # Operating system | |
| runs-on: ${{ matrix.os }} | |
| # Steps | |
| steps: | |
| # Set environment variables as echo "{name}={value}" >> $GITHUB_ENV | |
| - name: Set environment variables | |
| run: | | |
| # Set environment variables | |
| if [ ${{ matrix.os }} == 'macos-12' ] || [ ${{ matrix.os }} == 'macos-13' ]; then | |
| echo "Set STELLA_SYSTEM = macos" | |
| echo "STELLA_SYSTEM=macos" >> $GITHUB_ENV | |
| echo "Set FFTW_LIB_DIR = /usr/local/Cellar/fftw/3.3.10_1/lib/" | |
| echo "FFTW_LIB_DIR=/usr/local/Cellar/fftw/3.3.10_1/lib/" >> $GITHUB_ENV | |
| echo "Set FFTW_INC_DIR = /usr/local/include/" | |
| echo "FFTW_INC_DIR=/usr/local/include/" >> $GITHUB_ENV | |
| echo "Set NETCDF_LIB_DIR = /usr/local/lib -L/usr/local/Cellar/netcdf-fortran/4.6.1/lib/" | |
| echo "NETCDF_LIB_DIR=/usr/local/lib -L/usr/local/Cellar/netcdf-fortran/4.6.1/lib/" >> $GITHUB_ENV | |
| echo "Set NETCDF_INC_DIR = /usr/local/Cellar/netcdf-fortran/4.6.1/include/" | |
| echo "NETCDF_INC_DIR=/usr/local/Cellar/netcdf-fortran/4.6.1/include/" >> $GITHUB_ENV | |
| elif [ ${{ matrix.os }} == 'macos-14' ]; then | |
| echo "Set STELLA_SYSTEM = macos" | |
| echo "STELLA_SYSTEM=macos" >> $GITHUB_ENV | |
| echo "Set FFTW_LIB_DIR = /opt/homebrew/Cellar/fftw/3.3.10_1/lib/" | |
| echo "FFTW_LIB_DIR=/opt/homebrew/Cellar/fftw/3.3.10_1/lib/" >> $GITHUB_ENV | |
| echo "Set FFTW_INC_DIR = /opt/homebrew/include/" | |
| echo "FFTW_INC_DIR=/opt/homebrew/include/" >> $GITHUB_ENV | |
| echo "Set NETCDF_LIB_DIR = /opt/homebrew/lib -L/opt/homebrew/Cellar/netcdf-fortran/4.6.1/lib/" | |
| echo "NETCDF_LIB_DIR=/opt/homebrew/lib -L/opt/homebrew/Cellar/netcdf-fortran/4.6.1/lib/" >> $GITHUB_ENV | |
| echo "Set NETCDF_INC_DIR = /opt/homebrew/Cellar/netcdf-fortran/4.6.1/include/" | |
| echo "NETCDF_INC_DIR=/opt/homebrew/Cellar/netcdf-fortran/4.6.1/include/" >> $GITHUB_ENV | |
| elif ${{ contains(matrix.os, 'ubuntu') }}; then | |
| echo "Set STELLA_SYSTEM = gnu_ubuntu" | |
| echo "STELLA_SYSTEM=gnu_ubuntu" >> $GITHUB_ENV | |
| fi | |
| # Install dependencies | |
| - name: Install dependencies | |
| run: | | |
| # Install dependencies | |
| if ${{ contains(matrix.os, 'macos') }}; then | |
| brew install gcc@11 make openmpi fftw netcdf-fortran gnu-sed | |
| if [ ${{ matrix.os }} == 'macos-12' ] || [ ${{ matrix.os }} == 'macos-13' ]; then | |
| sudo ln -s /usr/local/bin/gfortran-11 /usr/local/bin/gfortran | |
| sudo mkdir /usr/local/gfortran; sudo ln -s /usr/local/Cellar/gcc@11/*/lib/gcc/11 /usr/local/gfortran/lib | |
| elif [ ${{ matrix.os }} == 'macos-14' ]; then | |
| sudo ln -s /opt/homebrew/bin/gfortran-11 /opt/homebrew/bin/gfortran | |
| fi | |
| elif ${{ contains(matrix.os, 'ubuntu') }}; then | |
| sudo apt update | |
| sudo apt install -y gfortran make libfftw3-dev libnetcdf-dev libnetcdff-dev | |
| sudo apt install -y netcdf-bin python3 python3-pip openmpi-bin libopenmpi-dev | |
| if [ ${{ matrix.os }} == 'ubuntu-24.04' ]; then sudo apt install -y libblas-dev liblapack-dev; fi | |
| fi | |
| # Check-out repository under $GITHUB_WORKSPACE | |
| - name: Check-out repository | |
| uses: actions/checkout@v4 | |
| # Build stella executable | |
| - name: Build stella | |
| run: | | |
| # Check system variables needed for Make | |
| if ${{ contains(matrix.os, 'macos') }}; then | |
| echo " "; echo "System variables:" | |
| echo " FFTW_LIB_DIR = $FFTW_LIB_DIR" | |
| echo " FFTW_INC_DIR = $FFTW_INC_DIR" | |
| echo " NETCDF_LIB_DIR = $NETCDF_LIB_DIR" | |
| echo " NETCDF_INC_DIR = $NETCDF_INC_DIR" | |
| fi | |
| # Download the submodules | |
| echo " "; echo "Download submodules:" | |
| git submodule update --init --recursive | |
| # Build stella with Make or CMake | |
| echo " "; echo "Build stella with ${{ matrix.compiler }}:" | |
| if [ ${{ matrix.compiler }} == 'Make' ]; then | |
| make -j 4 | |
| fi | |
| if [ ${{ matrix.compiler }} == 'CMake' ]; then | |
| cmake . -B COMPILATION/build_cmake | |
| cmake --build COMPILATION/build_cmake -j 4 | |
| fi | |
| # Print system information | |
| - name: System information | |
| run: | | |
| if ${{ contains(matrix.os, 'macos') }}; then | |
| echo " "; echo "System information:"; echo "$(system_profiler SPHardwareDataType | sed 's/^/ /')" | |
| echo " "; echo "Gfortran version:"; echo "$(gfortran --version | sed 's/^/ /')" | |
| echo " "; echo "Clang version:"; echo "$(clang --version | sed 's/^/ /')" | |
| make numerical-tests-system | |
| elif ${{ contains(matrix.os, 'ubuntu') }}; then | |
| echo " "; echo "System information:"; echo "$(cat /etc/*release | sed 's/^/ /')" | |
| echo " "; echo "Number of cores:"; echo "$(lscpu | egrep 'Model name|Socket|Thread|NUMA|CPU\(s\)' | sed 's/^/ /')" | |
| echo " "; echo "Gfortran version:"; echo "$(gfortran --version | sed 's/^/ /')" | |
| echo " "; echo "Netcdf version:"; echo "$(nf-config --all | sed 's/^/ /')" | |
| make numerical-tests-system | |
| fi | |
| # Check $GITHUB_WORKSPACE | |
| - name: Check Github Workspace | |
| run: | | |
| echo " "; echo "Running directory:"; echo " $(pwd)" | |
| echo " "; echo "Files in directory:"; echo "$(ls -la | sed 's/^/ /')" | |
| # Install python environment | |
| - name: Install python virtual environment | |
| run: | | |
| if [ ${{ matrix.os }} == 'ubuntu-24.04' ] || [ ${{ matrix.os }} == 'macos-14' ]; then | |
| python3 -m venv AUTOMATIC_TESTS/venv | |
| source AUTOMATIC_TESTS/venv/bin/activate | |
| pip3 install -r AUTOMATIC_TESTS/requirements.txt | |
| else | |
| pip3 install --user -r AUTOMATIC_TESTS/requirements.txt | |
| fi | |
| if ${{ contains(matrix.os, 'macos') }}; then | |
| gsed -i 's/nproc = 16/nproc = 4/g' AUTOMATIC_TESTS/config.ini | |
| fi | |
| # Perform python tests | |
| - name: Python tests 1 - Does stella run | |
| run: | | |
| if [ ${{ matrix.os }} == 'ubuntu-24.04' ] || [ ${{ matrix.os }} == 'macos-14' ]; then source AUTOMATIC_TESTS/venv/bin/activate; fi | |
| make numerical-tests-1 | |
| - name: Python tests 2 - Geometry | |
| if: success() || failure() | |
| run: | | |
| if [ ${{ matrix.os }} == 'ubuntu-24.04' ] || [ ${{ matrix.os }} == 'macos-14' ]; then source AUTOMATIC_TESTS/venv/bin/activate; fi | |
| make numerical-tests-2 | |
| - name: Python tests 3 - Gyrokinetic equation | |
| if: success() || failure() | |
| run: | | |
| if [ ${{ matrix.os }} == 'ubuntu-24.04' ] || [ ${{ matrix.os }} == 'macos-14' ]; then source AUTOMATIC_TESTS/venv/bin/activate; fi | |
| make numerical-tests-3 | |
| - name: Python tests 4 - Flux tube | |
| if: success() || failure() | |
| run: | | |
| if [ ${{ matrix.os }} == 'ubuntu-24.04' ] || [ ${{ matrix.os }} == 'macos-14' ]; then source AUTOMATIC_TESTS/venv/bin/activate; fi | |
| make numerical-tests-4 | |
| - name: Python tests 5 - Diagnostics | |
| if: success() || failure() | |
| run: | | |
| if [ ${{ matrix.os }} == 'ubuntu-24.04' ] || [ ${{ matrix.os }} == 'macos-14' ]; then source AUTOMATIC_TESTS/venv/bin/activate; fi | |
| make numerical-tests-5 | |
| - name: Python tests 6 - Full Flux Surface | |
| if: success() || failure() | |
| run: | | |
| if [ ${{ matrix.os }} == 'ubuntu-24.04' ] || [ ${{ matrix.os }} == 'macos-14' ]; then source AUTOMATIC_TESTS/venv/bin/activate; fi | |
| make numerical-tests-6 | |
| - name: Python tests 7 - Electromagnetic effects" | |
| if: success() || failure() | |
| run: | | |
| if [ ${{ matrix.os }} == 'ubuntu-24.04' ] || [ ${{ matrix.os }} == 'macos-14' ]; then source AUTOMATIC_TESTS/venv/bin/activate; fi | |
| make numerical-tests-7 | |
| #----------------------------------------------------------------------- | |
| # Quick build | |
| #----------------------------------------------------------------------- | |
| # Build stella to perform python and fortran tests | |
| build-stella-quick: | |
| name: Build stella quickly | |
| runs-on: ubuntu-22.04 | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| STELLA_SYSTEM: gnu_ubuntu | |
| steps: | |
| # Check-out repository under $GITHUB_WORKSPACE | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| # Install dependencies | |
| - name: Install dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install -y gfortran make libfftw3-dev libnetcdf-dev libnetcdff-dev | |
| sudo apt install -y netcdf-bin python3 python3-pip openmpi-bin libopenmpi-dev | |
| # Build stella executable | |
| - name: Build stella | |
| run: | | |
| git submodule update --init --recursive | |
| make -j 12 | |
| # Stella is bugged when compiling without the falg debug = on | |
| # So the python tests will break when compiling with CMake | |
| #cmake . -B COMPILATION/build_cmake | |
| #cmake --build COMPILATION/build_cmake -j 4 | |
| # Upload stella | |
| - name: Upload stella | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: stella-executable | |
| path: stella | |
| retention-days: 1 | |
| #----------------------------------------------------------------------- | |
| # Python tests | |
| #----------------------------------------------------------------------- | |
| # Perform python tests one by one | |
| python-tests: | |
| runs-on: ubuntu-22.04 | |
| needs: build-stella-quick | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| STELLA_SYSTEM: gnu_ubuntu | |
| # Run the same set-up multiple times | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - name: "1 - Does stella run " | |
| - name: "2 - Geometry" | |
| - name: "3 - Gyrokinetic equation" | |
| - name: "4 - Flux tube" | |
| - name: "5 - Diagnostics" | |
| - name: "6 - Full Flux Surface" | |
| - name: "7 - Electromagnetic effects" | |
| steps: | |
| # Check-out repository under $GITHUB_WORKSPACE | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| # Install dependencies | |
| - name: Install dependencies and python virtual environment | |
| run: | | |
| sudo apt update | |
| sudo apt install -y gfortran make libfftw3-dev libnetcdf-dev libnetcdff-dev | |
| sudo apt install -y netcdf-bin python3 python3-pip openmpi-bin libopenmpi-dev | |
| pip3 install --user -r AUTOMATIC_TESTS/requirements.txt | |
| sed -i 's/nproc = 16/nproc = 4/g' AUTOMATIC_TESTS/config.ini | |
| # Download stella executable from previous job | |
| - name: Download stella | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: stella-executable | |
| # Perform python tests | |
| - name: Numerical python tests | |
| run: | | |
| # Make stella executable | |
| chmod +x stella | |
| # Run one of the python tests | |
| if ${{ contains(matrix.config.name, '1 -') }}; then make numerical-tests-1; fi | |
| if ${{ contains(matrix.config.name, '2 -') }}; then make numerical-tests-2; fi | |
| if ${{ contains(matrix.config.name, '3 -') }}; then make numerical-tests-3; fi | |
| if ${{ contains(matrix.config.name, '4 -') }}; then make numerical-tests-4; fi | |
| if ${{ contains(matrix.config.name, '5 -') }}; then make numerical-tests-5; fi | |
| if ${{ contains(matrix.config.name, '6 -') }}; then make numerical-tests-6; fi | |
| if ${{ contains(matrix.config.name, '7 -') }}; then make numerical-tests-7; fi | |
| # Perform python on 1 processor. | |
| python-tests-nproc1: | |
| name: Python tests on 1 processor | |
| runs-on: ubuntu-22.04 | |
| needs: build-stella-quick | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| STELLA_SYSTEM: gnu_ubuntu | |
| steps: | |
| # Check-out repository under $GITHUB_WORKSPACE | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| # Install dependencies | |
| - name: Install dependencies and python virtual environment | |
| run: | | |
| sudo apt update | |
| sudo apt install -y gfortran make libfftw3-dev libnetcdf-dev libnetcdff-dev | |
| sudo apt install -y netcdf-bin python3 python3-pip openmpi-bin libopenmpi-dev | |
| pip3 install --user -r AUTOMATIC_TESTS/requirements.txt | |
| sed -i 's/nproc = 16/nproc = 1/g' AUTOMATIC_TESTS/config.ini | |
| # Download stella executable from previous job | |
| - name: Download stella | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: stella-executable | |
| # Make stella executable | |
| - name: Make stella executable | |
| run: chmod +x stella | |
| # Perform python tests | |
| - name: Python tests 1 - Does stella run | |
| run: make numerical-tests-1 | |
| - name: Python tests 2 - Geometry | |
| if: success() || failure() | |
| run: make numerical-tests-2 | |
| - name: Python tests 3 - Gyrokinetic equation | |
| if: success() || failure() | |
| run: make numerical-tests-3 | |
| - name: Python tests 4 - Flux tube | |
| if: success() || failure() | |
| run: make numerical-tests-4 | |
| - name: Python tests 5 - Diagnostics | |
| if: success() || failure() | |
| run: make numerical-tests-5 | |
| - name: Python tests 6 - Full Flux Surface | |
| if: success() || failure() | |
| run: make numerical-tests-6 | |
| - name: Python tests 7 - Electromagnetic effects" | |
| if: success() || failure() | |
| run: make numerical-tests-7 | |
| #----------------------------------------------------------------------- | |
| # Fortran tests | |
| #----------------------------------------------------------------------- | |
| fortran-tests: | |
| runs-on: ubuntu-22.04 | |
| name: "Automated Fortran tests" | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| STELLA_SYSTEM: gnu_ubuntu | |
| steps: | |
| # Check-out repository under $GITHUB_WORKSPACE | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| # Install dependencies | |
| - name: Install dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install -y gfortran make libfftw3-dev libnetcdf-dev libnetcdff-dev netcdf-bin | |
| sudo apt install -y python3 python3-pip openmpi-bin libopenmpi-dev libblas-dev liblapack-dev | |
| pip3 install --user -r AUTOMATIC_TESTS/requirements.txt | |
| # Build stella executable and pFUnit library | |
| - name: Build stella and perform automated Fortran tests | |
| run: | | |
| git submodule update --init --recursive | |
| cmake . -B build -DSTELLA_ENABLE_TESTS=on | |
| cmake --build build -j1 --target check | |
| #----------------------------------------------------------------------- | |
| # Build in debug mode | |
| #----------------------------------------------------------------------- | |
| # Build stella with Make in debug mode, here the python tests do not work! | |
| # Specifically, the flush statement in mini_libstell's | |
| # read_wout_mod.F module in the readw_and_open() routine breaks | |
| # when reading a VMEC equilibirium during the python tests. | |
| debug-build: | |
| runs-on: ubuntu-22.04 | |
| name: "Build stella in debug mode" | |
| env: | |
| OMPI_MCA_rmaps_base_oversubscribe: yes | |
| MPIRUN: mpiexec -np | |
| STELLA_SYSTEM: gnu_ubuntu_debug | |
| steps: | |
| # Check-out repository under $GITHUB_WORKSPACE | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| # Install dependencies | |
| - name: Install dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install -y gfortran make libfftw3-dev libnetcdf-dev libnetcdff-dev netcdf-bin | |
| sudo apt install -y python3 python3-pip openmpi-bin libopenmpi-dev libblas-dev liblapack-dev | |
| # Build stella executable | |
| - name: Build stella in debug mode | |
| run: make -j 4 | |
| # If the operating system is changed, we can check where modules are installed | |
| # by reading the CMake cache file: | |
| # echo " "; echo "--------- DIRECTORIES ----------" | |
| # cat COMPILATION/build_cmake/CMakeCache.txt | |
| # We can also install Homebrew and use the following lines of code | |
| # echo "Install Homebrew:" | |
| # /bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"; brew update | |
| # echo "FFTW_LIB_DIR=/opt/homebrew/lib/" >> $GITHUB_ENV; echo "Set FFTW_LIB_DIR" | |
| # echo "FFTW_INC_DIR=/opt/homebrew/include/" >> $GITHUB_ENV; echo "Set FFTW_INC_DIR" | |
| # echo "NETCDF_LIB_DIR=/opt/homebrew/lib/" >> $GITHUB_ENV; echo "Set NETCDF_LIB_DIR" | |
| # echo "NETCDF_INC_DIR=/opt/homebrew/include/" >> $GITHUB_ENV; echo "Set NETCDF_INC_DIR" | |
| # brew install gcc fftw netcdf netcdf-fortran open-mpi python | |
| # ln -sn /opt/homebrew/bin/gfortran-12 /opt/homebrew/bin/gfortran | |
| # if: github.event_name == 'push' | |
| # Turn this job off for now !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! | |
| #if: false |