check_pyrokinetics.yml

# Run these tests automatically on Github on every push and pull request.
name: Check Pyrokinetics
on: [push, pull_request]

# We always run in a bash shell
defaults:
  run:
    shell: bash

# First build stella, and then perform pyrokinetics tests
jobs:

#-----------------------------------------------------------------------
#                              Quick build                              
#-----------------------------------------------------------------------

  # Build stella to perform pyrokinetics tests
  pyrokinetics-tests: 
    name: Check Pyrokinetics
    runs-on: ubuntu-22.04
    env:
      OMPI_MCA_rmaps_base_oversubscribe: yes
      MPIRUN: mpiexec -np
      STELLA_SYSTEM: gnu_ubuntu

    steps:

      # Check-out repository under $GITHUB_WORKSPACE
      - name: Check out repository
        uses: actions/checkout@v4

      # Install dependencies
      - name: Install dependencies
        run: |
          sudo apt update
          sudo apt install -y gfortran make libfftw3-dev libnetcdf-dev libnetcdff-dev 
          sudo apt install -y netcdf-bin python3 python3-pip openmpi-bin libopenmpi-dev

      # Build stella executable
      - name: Build stella
        run: |
          git submodule update --init --recursive
          make -j 12
          chmod +x stella
          
      # Install dependencies
      - name: Install dependencies and python virtual environment
        run: |
          sudo apt update
          sudo apt install -y gfortran make libfftw3-dev libnetcdf-dev libnetcdff-dev 
          sudo apt install -y netcdf-bin python3 python3-pip openmpi-bin libopenmpi-dev
          pip3 install --user -r AUTOMATIC_TESTS/requirements.txt
          pip3 install EXTERNALS/pyrokinetics/.
          sed -i 's/nproc = 16/nproc = 1/g' AUTOMATIC_TESTS/config.ini
          
      # Perform pyrokinetics tests
      - name: Pyrokinetics tests
        run: make pyrokinetics-tests