diff --git a/src/scripts/Cicero.sh b/src/scripts/Cicero.sh index 91bc88c..31f85f7 100755 --- a/src/scripts/Cicero.sh +++ b/src/scripts/Cicero.sh @@ -338,8 +338,6 @@ find $CICERO_DATADIR/$SAMPLE/ -mindepth 2 -type f -name 'unfiltered.fusion.txt' find $CICERO_DATADIR/$SAMPLE/ -mindepth 2 -type f -name 'unfiltered.internal.txt' -exec cat {} \; | sort -V -k 9,9 -k 10,10n -k 11,11n > $CICERO_DATADIR/$SAMPLE/unfiltered.internal.txt } 1> 03_Combine.out 2> 03_Combine.err -wait - ## QC if [ ! -s $CICERO_DATADIR/$SAMPLE/unfiltered.fusion.txt ] then