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fix: docker/umap/Dockerfile to reduce vulnerabilities #899

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fix: docker/umap/Dockerfile to reduce vulnerabilities

fix: docker/umap/Dockerfile to reduce vulnerabilities #899

Run time

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Job Run time
call-build / list-images
13s
call-build / build-images (docker/umap)
8m 27s
call-build / build-images (docker/minfi)
4m 39s
call-build / build-images (docker/bwa)
1m 4s
call-build / build-images (docker/util)
2m 24s
call-build / build-images (docker/pandas)
1m 11s
call-build / build-images (docker/python-plotting)
3m 28s
call-test / list-files
8s
call-test / sprocket_test (./workflows/rnaseq/rnaseq-standard.wdl, sprocket)
7m 35s
call-test / sprocket_test (./workflows/rnaseq/rnaseq-variant-calling.wdl, sprocket)
7m 31s
call-test / sprocket_test (./workflows/qc/markdups-post.wdl, sprocket)
7m 53s
call-test / sprocket_test (./workflows/qc/quality-check-standard.wdl, sprocket)
7m 26s
call-test / sprocket_test (./data_structures/read_group.wdl, sprocket)
7m 44s
call-test / sprocket_test (./workflows/methylation/methylation-standard.wdl, sprocket)
7m 32s
call-test / sprocket_test (./workflows/rnaseq/rnaseq-core.wdl, sprocket)
7m 38s
call-test / sprocket_test (./workflows/rnaseq/rnaseq-standard-fastq.wdl, sprocket)
7m 38s
call-test / sprocket_test (./workflows/methylation/methylation-cohort.wdl, sprocket)
7m 34s
call-test / sprocket_test (./workflows/dnaseq/dnaseq-core.wdl, sprocket)
7m 38s
call-test / sprocket_test (./workflows/reference/star-db-build.wdl, sprocket)
7m 27s
call-test / sprocket_test (./workflows/general/samtools-merge.wdl, sprocket)
7m 29s
call-test / sprocket_test (./workflows/reference/gatk-reference.wdl, sprocket)
7m 45s
call-test / sprocket_test (./workflows/dnaseq/dnaseq-standard-fastq.wdl, sprocket)
7m 24s
call-test / sprocket_test (./tools/multiqc.wdl, sprocket)
8m 17s
call-test / sprocket_test (./workflows/reference/bwa-db-build.wdl, sprocket)
7m 33s
call-test / sprocket_test (./tools/ngsderive.wdl, sprocket)
13m 3s
call-test / sprocket_test (./workflows/chipseq/chipseq-standard.wdl, sprocket)
8m 14s
call-test / sprocket_test (./tools/star.wdl, sprocket)
8m 7s
call-test / sprocket_test (./tools/gatk4.wdl, sprocket)
8m 31s
call-test / sprocket_test (./workflows/general/alignment-post.wdl, sprocket)
7m 27s
call-test / sprocket_test (./tools/bwa.wdl, sprocket)
6m 35s
call-test / sprocket_test (./workflows/dnaseq/dnaseq-standard.wdl, sprocket)
8m 17s
call-test / sprocket_test (./workflows/general/bam-to-fastqs.wdl, sprocket)
6m 27s
call-test / sprocket_test (./tools/fastqc.wdl, sprocket)
7m 37s
call-test / sprocket_test (./workflows/reference/qc-reference.wdl, sprocket)
7m 40s
call-test / sprocket_test (./tools/librarian.wdl, sprocket)
7m 56s
call-test / sprocket_test (./tools/fq.wdl, sprocket)
7m 34s
call-test / sprocket_test (./tools/samtools.wdl, sprocket)
8m 34s
call-test / sprocket_test (./tools/sambamba.wdl, sprocket)
7m 54s
call-test / sprocket_test (./tools/arriba.wdl, sprocket)
8m 17s
call-test / sprocket_test (./tools/htseq.wdl, sprocket)
8m 18s
call-test / sprocket_test (./data_structures/flag_filter.wdl, sprocket)
8m 50s
call-test / sprocket_test (./tools/mosdepth.wdl, sprocket)
7m 57s
call-test / sprocket_test (./tools/picard.wdl, sprocket)
10m 36s
call-test / sprocket_test (./tools/md5sum.wdl, sprocket)
8m 45s
call-test / sprocket_test (./tools/fastp.wdl, sprocket)
8m 20s
call-test / sprocket_test (./tools/deeptools.wdl, sprocket)
8m 45s
call-test / sprocket_test (./tools/qualimap.wdl, sprocket)
7m 45s
call-test / sprocket_test (./workflows/methylation/methylation-preprocess.wdl, sprocket)
7m 25s
call-test / sprocket_test (./tools/kraken2.wdl, sprocket)
8m 48s
call-test / sprocket_test (./tools/util.wdl, sprocket)
8m 35s
5h 59m 55s