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Tasks that take both pos/name sorted probably need different resources #170

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a-frantz opened this issue Jul 15, 2024 · 0 comments
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@a-frantz
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Major culprit here is HTSEQ: https://github.com/stjudecloud/workflows/blob/main/tools/htseq.wdl

It has a pretty terrible sort algorithm and eats up resources when the input is position sorted. We've exposed the name sort option but still allocate a large amount of memory and disk. Neither are likely needed.

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