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Add optional flag to specify the runtime a command should apply to #86

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@dlamarmorgan

In some rare cases, a user may use more than 1 runtime (i.e. docker for DB and standalone for satellite and services). Currently when issuing storj-up commands to update the runtime, there is no way to specify which runtime the commands should belong to. A new flag should be added to allow for explicitly choosing a runtime for each command.

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