-
Notifications
You must be signed in to change notification settings - Fork 2
/
environment_dev.yml
98 lines (83 loc) · 1.32 KB
/
environment_dev.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
#
# Tools for locan development
#
# Update existing environment: conda env update --file "./environment_dev.yml"
#
name: locan
channels:
- conda-forge
- defaults
dependencies:
# Python
- cython
- pip
- tqdm
- qtpy!=2.3.0
- typing_extensions
- lazy_loader>=0.3
# Python tests
- pytest
# Scientific python
- numpy>1.20.0
- pandas
- scipy
- scikit-learn
- scikit-image
- matplotlib
- networkx
- shapely!=2.0.0,!=2.0.1
- lmfit
# Google
- protobuf
# File formats
- ruamel.yaml
- tifffile
- asdf
- # only needed for python < 3.11:
- tomli>=1.1.0
# Data analysis tools
- boost-histogram
- fast-histogram
# Extra requirements
# - pyside2>=5.12.3
- hdbscan
- colorcet
- trackpy
- napari
- mpl-scatter-density
- requests
- h5py
# Various issues
- pydantic!=1.8.0
############################################
# additions for development
############################################
# Python tests
- asv
- coverage
- pytest
# Development
- black~=24.0
- build
- mypy
- numpy
- pandas-stubs
- pre-commit
- ruff
- twine
- types-requests
- types-protobuf
- types-tqdm
# Documentation
- ipython
- furo
- myst-nb
- sphinx
- sphinx-copybutton
- sphinx-autodoc-typehints
############################################
# additions from PyPI
############################################
- pip:
- open3d!=0.12.0; python_version<'3.12'
- ray[default]