From 0ca92ae38cbda818c0b4bd3997ef5a55472bd8f8 Mon Sep 17 00:00:00 2001 From: Laurent Sorber Date: Sun, 21 Apr 2024 11:48:01 +0000 Subject: [PATCH] chore: upgrade scaffolding --- .cruft.json | 21 +- .devcontainer/devcontainer.json | 2 + .github/dependabot.yml | 20 +- .github/workflows/test.yml | 2 +- README.md | 4 +- notebooks/README.ipynb | 32 +- poetry.lock | 690 ++++++++++++++++---------------- pyproject.toml | 33 +- 8 files changed, 421 insertions(+), 383 deletions(-) diff --git a/.cruft.json b/.cruft.json index 949bfd0..293b1f4 100644 --- a/.cruft.json +++ b/.cruft.json @@ -1,30 +1,27 @@ { "template": "https://github.com/radix-ai/poetry-cookiecutter", - "commit": "4127874124193c60cd5e2bfaa025473b8f30411f", + "commit": "8ab7ee0accff3b9cb0e470bfc925858fc04d1e97", "checkout": null, "context": { "cookiecutter": { - "package_name": "Conformal Tights", - "package_description": "A scikit-learn meta-estimator for computing tight conformal predictions", - "package_url": "https://github.com/radix-ai/conformal-tights", + "project_type": "package", + "project_name": "Conformal Tights", + "project_description": "A Python package that adds conformal prediction of coherent quantiles and intervals to any scikit-learn regressor or Darts forecaster.", + "project_url": "https://github.com/radix-ai/conformal-tights", "author_name": "Laurent Sorber", "author_email": "laurent@radix.ai", "python_version": "3.10", - "docker_image": "python:$PYTHON_VERSION-slim", "development_environment": "strict", "with_conventional_commits": "1", "with_fastapi_api": "0", - "with_jupyter_lab": "0", - "with_pydantic_typing": "0", - "with_sentry_logging": "0", - "with_streamlit_app": "0", "with_typer_cli": "0", "continuous_integration": "GitHub", - "docstring_style": "NumPy", "private_package_repository_name": "", "private_package_repository_url": "", - "__package_name_kebab_case": "conformal-tights", - "__package_name_snake_case": "conformal_tights", + "__docker_image": "python:$PYTHON_VERSION-slim", + "__docstring_style": "NumPy", + "__project_name_kebab_case": "conformal-tights", + "__project_name_snake_case": "conformal_tights", "_template": "https://github.com/radix-ai/poetry-cookiecutter" } }, diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 73efb6b..4bde056 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -10,6 +10,8 @@ "vscode": { "extensions": [ "charliermarsh.ruff", + "GitHub.vscode-github-actions", + "GitHub.vscode-pull-request-github", "ms-python.mypy-type-checker", "ms-python.python", "ms-toolsai.jupyter", diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 0232f93..93d5246 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -8,4 +8,22 @@ updates: commit-message: prefix: "ci" prefix-development: "ci" - include: "scope" + include: scope + groups: + ci-dependencies: + patterns: + - "*" + - package-ecosystem: pip + directory: / + schedule: + interval: monthly + commit-message: + prefix: "chore" + prefix-development: "build" + include: scope + allow: + - dependency-type: development + versioning-strategy: increase + groups: + development-dependencies: + dependency-type: development diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 27c82ae..d54d0ff 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -28,7 +28,7 @@ jobs: node-version: 21 - name: Install @devcontainers/cli - run: npm install --location=global @devcontainers/cli@0.55.0 + run: npm install --location=global @devcontainers/cli@0.58.0 - name: Start Dev Container run: | diff --git a/README.md b/README.md index 3105aaf..b8533e5 100644 --- a/README.md +++ b/README.md @@ -262,10 +262,12 @@ plt.tight_layout() ```sh cat << EOF >> ~/.ssh/config + Host * AddKeysToAgent yes IgnoreUnknown UseKeychain UseKeychain yes + ForwardAgent yes EOF ``` @@ -275,12 +277,12 @@ plt.tight_layout() 2. Install Docker 1. [Install Docker Desktop](https://www.docker.com/get-started). - - Enable *Use Docker Compose V2* in Docker Desktop's preferences window. - *Linux only*: - Export your user's user id and group id so that [files created in the Dev Container are owned by your user](https://github.com/moby/moby/issues/3206): ```sh cat << EOF >> ~/.bashrc + export UID=$(id --user) export GID=$(id --group) EOF diff --git a/notebooks/README.ipynb b/notebooks/README.ipynb index 104841f..2845458 100644 --- a/notebooks/README.ipynb +++ b/notebooks/README.ipynb @@ -9,6 +9,7 @@ "# 👖 Conformal Tights\n", "\n", "Conformal Tights is a Python package that exports:\n", + "\n", "- a [scikit-learn](https://github.com/scikit-learn/scikit-learn) [meta-estimator](https://scikit-learn.org/stable/glossary.html#term-meta-estimator) that adds [conformal prediction](https://en.wikipedia.org/wiki/Conformal_prediction) of coherent [quantiles](https://en.wikipedia.org/wiki/Quantile) and [intervals](https://en.wikipedia.org/wiki/Prediction_interval) to any [scikit-learn regressor](https://scikit-learn.org/stable/glossary.html#term-regressor)\n", "- a [Darts](https://github.com/unit8co/darts) [forecaster](https://unit8co.github.io/darts/generated_api/darts.models.forecasting.regression_model.html) that adds conformally calibrated [probabilistic time series forecasting](https://unit8co.github.io/darts/userguide/forecasting_overview.html#probabilistic-forecasts) to any scikit-learn regressor\n", "\n", @@ -65,16 +66,7 @@ "remove_output" ] }, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "/opt/conformal-tights-env/lib/python3.10/site-packages/statsforecast/core.py:26: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\n", - " from tqdm.autonotebook import tqdm\n" - ] - } - ], + "outputs": [], "source": [ "from conformal_tights import ConformalCoherentQuantileRegressor\n", "from sklearn.datasets import fetch_openml\n", @@ -608,12 +600,15 @@ "\n", "1. [Generate an SSH key](https://docs.github.com/en/authentication/connecting-to-github-with-ssh/generating-a-new-ssh-key-and-adding-it-to-the-ssh-agent#generating-a-new-ssh-key) and [add the SSH key to your GitHub account](https://docs.github.com/en/authentication/connecting-to-github-with-ssh/adding-a-new-ssh-key-to-your-github-account).\n", "1. Configure SSH to automatically load your SSH keys:\n", + "\n", " ```sh\n", " cat << EOF >> ~/.ssh/config\n", + "\n", " Host *\n", " AddKeysToAgent yes\n", " IgnoreUnknown UseKeychain\n", " UseKeychain yes\n", + " ForwardAgent yes\n", " EOF\n", " ```\n", "\n", @@ -623,11 +618,12 @@ "2. Install Docker\n", "\n", "1. [Install Docker Desktop](https://www.docker.com/get-started).\n", - " - Enable _Use Docker Compose V2_ in Docker Desktop's preferences window.\n", - " - _Linux only_:\n", + " - *Linux only*:\n", " - Export your user's user id and group id so that [files created in the Dev Container are owned by your user](https://github.com/moby/moby/issues/3206):\n", + "\n", " ```sh\n", " cat << EOF >> ~/.bashrc\n", + " \n", " export UID=$(id --user)\n", " export GID=$(id --group)\n", " EOF\n", @@ -639,7 +635,7 @@ "3. Install VS Code or PyCharm\n", "\n", "1. [Install VS Code](https://code.visualstudio.com/) and [VS Code's Dev Containers extension](https://marketplace.visualstudio.com/items?itemName=ms-vscode-remote.remote-containers). Alternatively, install [PyCharm](https://www.jetbrains.com/pycharm/download/).\n", - "2. _Optional:_ install a [Nerd Font](https://www.nerdfonts.com/font-downloads) such as [FiraCode Nerd Font](https://github.com/ryanoasis/nerd-fonts/tree/master/patched-fonts/FiraCode) and [configure VS Code](https://github.com/tonsky/FiraCode/wiki/VS-Code-Instructions) or [configure PyCharm](https://github.com/tonsky/FiraCode/wiki/Intellij-products-instructions) to use it.\n", + "2. *Optional:* install a [Nerd Font](https://www.nerdfonts.com/font-downloads) such as [FiraCode Nerd Font](https://github.com/ryanoasis/nerd-fonts/tree/master/patched-fonts/FiraCode) and [configure VS Code](https://github.com/tonsky/FiraCode/wiki/VS-Code-Instructions) or [configure PyCharm](https://github.com/tonsky/FiraCode/wiki/Intellij-products-instructions) to use it.\n", "\n", "\n", "\n", @@ -650,11 +646,11 @@ "\n", "The following development environments are supported:\n", "\n", - "1. ⭐️ _GitHub Codespaces_: click on _Code_ and select _Create codespace_ to start a Dev Container with [GitHub Codespaces](https://github.com/features/codespaces).\n", - "1. ⭐️ _Dev Container (with container volume)_: click on [Open in Dev Containers](https://vscode.dev/redirect?url=vscode://ms-vscode-remote.remote-containers/cloneInVolume?url=https://github.com/radix-ai/conformal-tights) to clone this repository in a container volume and create a Dev Container with VS Code.\n", - "1. _Dev Container_: clone this repository, open it with VS Code, and run Ctrl/⌘ + ⇧ + P → _Dev Containers: Reopen in Container_.\n", - "1. _PyCharm_: clone this repository, open it with PyCharm, and [configure Docker Compose as a remote interpreter](https://www.jetbrains.com/help/pycharm/using-docker-compose-as-a-remote-interpreter.html#docker-compose-remote) with the `dev` service.\n", - "1. _Terminal_: clone this repository, open it with your terminal, and run `docker compose up --detach dev` to start a Dev Container in the background, and then run `docker compose exec dev zsh` to open a shell prompt in the Dev Container.\n", + "1. ⭐️ *GitHub Codespaces*: click on *Code* and select *Create codespace* to start a Dev Container with [GitHub Codespaces](https://github.com/features/codespaces).\n", + "1. ⭐️ *Dev Container (with container volume)*: click on [Open in Dev Containers](https://vscode.dev/redirect?url=vscode://ms-vscode-remote.remote-containers/cloneInVolume?url=https://github.com/radix-ai/conformal-tights) to clone this repository in a container volume and create a Dev Container with VS Code.\n", + "1. *Dev Container*: clone this repository, open it with VS Code, and run Ctrl/⌘ + ⇧ + P → *Dev Containers: Reopen in Container*.\n", + "1. *PyCharm*: clone this repository, open it with PyCharm, and [configure Docker Compose as a remote interpreter](https://www.jetbrains.com/help/pycharm/using-docker-compose-as-a-remote-interpreter.html#docker-compose-remote) with the `dev` service.\n", + "1. *Terminal*: clone this repository, open it with your terminal, and run `docker compose up --detach dev` to start a Dev Container in the background, and then run `docker compose exec dev zsh` to open a shell prompt in the Dev Container.\n", "\n", "\n", "\n", diff --git a/poetry.lock b/poetry.lock index 6e2d179..2afab51 100644 --- a/poetry.lock +++ b/poetry.lock @@ -16,87 +16,87 @@ triad = ">=0.6.1" [[package]] name = "aiohttp" -version = "3.9.4" +version = "3.9.5" description = "Async http client/server framework (asyncio)" optional = true python-versions = ">=3.8" files = [ - {file = "aiohttp-3.9.4-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:76d32588ef7e4a3f3adff1956a0ba96faabbdee58f2407c122dd45aa6e34f372"}, - {file = "aiohttp-3.9.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:56181093c10dbc6ceb8a29dfeea1e815e1dfdc020169203d87fd8d37616f73f9"}, - {file = "aiohttp-3.9.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:c7a5b676d3c65e88b3aca41816bf72831898fcd73f0cbb2680e9d88e819d1e4d"}, - 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