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Change Log

Full Changelog

Closed issues:

  • download_mlst_databases Could not connect to https://pubmlst.org/data/dbases.xml #77
  • Something went wrong, got a 500 status code at /usr/local/share/perl/5.22.2/Bio/MLST/Download/Downloadable.pm line 24. #75
  • Licence #68
  • Issue with running get_sequence_type #65

Merged pull requests:

v2.1.1630910 (2016-11-04)

Full Changelog

Merged pull requests:

  • Update mlst to latest perl #67 (andrewjpage)
  • Docker #66 (andrewjpage)
  • nds change to dist zilla starter bundle #64 (nds)
  • BUG: missing semicolon in get_emm_sequence_type script #63 (aslett1)
  • Order alleles consistently when concatonating #62 (bewt85)
  • Ignore metadata column headings in profiles #61 (bewt85)
  • [468141,463456]: Cope better with small changes to alleles #60 (bewt85)
  • Travis badge should just report master #59 (bewt85)
  • Added AUTHORS with ap13 and bt5 as authors #58 (aslett1)
  • BUG: Missing semicolon in get_sequence_type script #57 (bewt85)
  • Ticket 463462: dodgy default arguments for blast_exec and makeblastdb_exec #56 (bewt85)
  • Fix perl version in .travis.yml #55 (bewt85)
  • Hopefully adds Travis CI support #54 (bewt85)
  • Ticket 463083 Update versioning #53 (bewt85)
  • Ticket 452414 Fix false contamination #52 (bewt85)
  • Ticket 453529 Fix MLST spreadsheet output #51 (bewt85)
  • Ticket 442599 Fix database updated #50 (bewt85)
  • Fixes tests #49 (bewt85)
  • Deal with cases where allele name contains a - or _ #48 (carlacummins)
  • Prevented splitting of allele names in header #47 (carlacummins)
  • pass in number of parallel processes #46 (andrewjpage)
  • Added AUTHORS file #45 (aslett1)
  • changes in main bin file due to addition of -md5 option in the lib #44 (jyothishnt)
  • Changes in get_emm_sequence_type due to addition of -md5 option #43 (jyothishnt)
  • Fixed error when using -a option #42 (carlacummins)
  • Tests modified and passed successfully #41 (jyothishnt)
  • New -md5 option #40 (jyothishnt)

Merged pull requests: