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run_reports.sh
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run_reports.sh
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#!/bin/sh
# Usage: ./run_reports.sh [--sync-config] <start|stop>
#
#
# Description: This script can be used to start or stop the galaxy
# reports web application. Passing in --sync-config as the first
# argument to this will cause Galaxy's database and path parameters
# from universe_wsgi.ini to be copied over into reports_wsgi.ini.
cd `dirname $0`
# If there is a .venv/ directory, assume it contains a virtualenv that we
# should run this instance in.
if [ -d .venv ];
then
. .venv/bin/activate
fi
./scripts/common_startup.sh --skip-samples
if [ -z "$GALAXY_REPORTS_CONFIG" ]; then
if [ -f reports_wsgi.ini ]; then
GALAXY_REPORTS_CONFIG=reports_wsgi.ini
elif [ -f config/reports_wsgi.ini ]; then
GALAXY_REPORTS_CONFIG=config/reports_wsgi.ini
else
GALAXY_REPORTS_CONFIG=config/reports_wsgi.ini.sample
export GALAXY_REPORTS_CONFIG
fi
fi
GALAXY_REPORTS_PID=${GALAXY_REPORTS_PID:-reports_webapp.pid}
GALAXY_REPORTS_LOG=${GALAXY_REPORTS_LOG:-reports_webapp.log}
if [ -n "$GALAXY_REPORTS_CONFIG_DIR" ]; then
python ./scripts/build_universe_config.py "$GALAXY_REPORTS_CONFIG_DIR" "$GALAXY_REPORTS_CONFIG"
fi
if [ "$1" = "--sync-config" ];
then
python ./scripts/sync_reports_config.py
shift
fi
python ./scripts/paster.py serve "$GALAXY_REPORTS_CONFIG" --pid-file="$GALAXY_REPORTS_PID" --log-file="$GALAXY_REPORTS_LOG" $@