From b766ddff232f8976dcea9be8714ab4c6a3dce5b8 Mon Sep 17 00:00:00 2001 From: Shing Zhan Date: Mon, 19 Jun 2023 16:51:22 +0100 Subject: [PATCH] Fix bug --- src/compare_vcfs.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/compare_vcfs.py b/src/compare_vcfs.py index 049a8e0..a64e19c 100644 --- a/src/compare_vcfs.py +++ b/src/compare_vcfs.py @@ -140,7 +140,7 @@ def make_compatible_genotypes(ds1, ds2, acgt_alleles=False): ds2_subset["variant_contig"] = ds2_subset["variant_contig"].isel(variants=ds2_idx) ds2_subset["variant_position"] = ds2_subset["variant_position"].isel(variants=ds2_idx) ds2_subset["variant_allele"] = remapped_ds2_alleles - ds2_subset["call_genotype"] = remapped_ds2_genotypes.isel(variants=ds2_idx) + ds2_subset["call_genotype"] = remapped_ds2_genotypes ds2_subset["call_genotype_mask"] = ds2_subset["call_genotype_mask"].isel(variants=ds2_idx) return (ds1_subset, ds2_subset)