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I can not reproduce your example code #2

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nongbaoting opened this issue Apr 2, 2020 · 3 comments
Open

I can not reproduce your example code #2

nongbaoting opened this issue Apr 2, 2020 · 3 comments

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@nongbaoting
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I have encountered an error!

> sim.groups <- normalise(sim.groups)
Error in normalise(sim.groups) : could not find function "normalise"
@nongbaoting nongbaoting changed the title I can not repeat your example code I can not reproduce your example code Apr 2, 2020
@tengfei-emory
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tengfei-emory commented Apr 6, 2020 •
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It seems that the latest version of package scater renamed the normalise function as logNormCounts. You may try logNormCounts(sim.groups) instead.

@FengXu1218
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I have encountered an error!
Downloading GitHub repo tengfei-emory/scBatch@master
错误: Failed to install 'scBatch' from GitHub:
Could not find tools necessary to compile a package
Call pkgbuild::check_build_tools(debug = TRUE) to diagnose the problem.

@tengfei-emory
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You need to install Rtools to compile this package: https://cran.r-project.org/bin/windows/Rtools/.

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@nongbaoting @tengfei-emory @FengXu1218