Loss of all hits after cleaning step results in error message

[nbrait]

If all hits are lost during cleaning up step, it is put as an error for the next steps.
Error message: Opening the input file... Error: Error detecting input file format. First line seems to be blank. [Tue Jan 9 16:19:17 2024] Error in rule retrosearch_putatEVEs:
The code should be changed to exit that run accession instead. The same should go for if all hits turn out to be false positives. There should be an elegant way to exit it instead of generating also an empty pdf.

[thackl]

Can you provide me with an accession where this happens?

[nbrait]

APCH01 f.e. *PhD Candidate Virus Ecology and EvolutionLinnaeusborg, 5172-0762Tel: +31651400411Groningen Institute for Evolutionary Life Science (GELIFES), University of GroningenNijenborgh 7, 9747 AG Groningen, The Netherlands*

…

On Wed, Jan 24, 2024 at 3:23 PM Thomas Hackl ***@***.***> wrote: Can you provide me with an accession where this happens? — Reply to this email directly, view it on GitHub <#12 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ASRCRIL75IG7WIJLYIHKZMDYQEKO7AVCNFSM6AAAAABCFHFQVSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSMBYGIZTCOJYGA> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[nbrait]

Sorry I forgot that this is the case with a custom Flavi database. Here the link to the fasta file I used to build the db: https://github.com/giffordlabcvr/Flavivirus-GLUE/blob/master/digs/flavi-references.faa Otherwise setting min length really high should also result in not getting anything after cleaning step for simulation. Cheers, Nadja *PhD Candidate Virus Ecology and EvolutionLinnaeusborg, 5172-0762Tel: +31651400411Groningen Institute for Evolutionary Life Science (GELIFES), University of GroningenNijenborgh 7, 9747 AG Groningen, The Netherlands*

…

On Wed, Jan 24, 2024 at 3:26 PM Brait, Nadja ***@***.***> wrote: APCH01 f.e. *PhD Candidate Virus Ecology and EvolutionLinnaeusborg, 5172-0762Tel: +31651400411Groningen Institute for Evolutionary Life Science (GELIFES), University of GroningenNijenborgh 7, 9747 AG Groningen, The Netherlands* On Wed, Jan 24, 2024 at 3:23 PM Thomas Hackl ***@***.***> wrote: > Can you provide me with an accession where this happens? > > — > Reply to this email directly, view it on GitHub > <#12 (comment)>, > or unsubscribe > <https://github.com/notifications/unsubscribe-auth/ASRCRIL75IG7WIJLYIHKZMDYQEKO7AVCNFSM6AAAAABCFHFQVSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSMBYGIZTCOJYGA> > . > You are receiving this because you authored the thread.Message ID: > ***@***.***> >