api-reference.md

API Reference

This page provides automated API documentation extracted directly from the Python source code using mkdocstrings.

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Core Embedder

::: embpy.embedder.BioEmbedder

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Embedding Fusion

The fusion guide covers fitted preprocessing, identifier alignment and paired benchmarks. Feature outputs use the standard EmbeddingResult contract.

::: embpy.tl.fusion

::: embpy.tl.benchmark.benchmark_fusion

::: embpy.tl.benchmark.benchmark_fusion_retrieval

::: embpy.tl.benchmark.FusionBenchmarkResult

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Model Wrappers

Protein Models

::: embpy.models.protein_models

Text & Description Models

::: embpy.models.text_models

Molecule Models

::: embpy.models.molecule_models