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Add consensus approach #3

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tiagofilipe12 opened this issue Feb 20, 2018 · 1 comment
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Add consensus approach #3

tiagofilipe12 opened this issue Feb 20, 2018 · 1 comment
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enhancement New feature or request

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@tiagofilipe12
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Given that this pipeline accepts many approaches ranging from mapping, assembly and mash screen, a useful output would be to make a consensus between all the approaches and report it to the user in a JSON format to import in pATLAS.

@tiagofilipe12 tiagofilipe12 added the enhancement New feature or request label Feb 20, 2018
@tiagofilipe12 tiagofilipe12 self-assigned this Feb 20, 2018
@tiagofilipe12
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This could be implemented by just adding the result to each accession entry to a report JSON file. E.g.

{"a_given_accession": 
  {
    mapping: 0.91, 
    mash_screen: 0.93, 
    mash_dist: 0.7
  },
"another_accession": 
  {
    mapping: 0.6,
    mash_screen: 0.9,
    mash_dist: 0.8
  }
}

Then this JSON file would be read by pATLAS. For further information on how to implement this in pATLAS go to tiagofilipe12/pATLAS#124.

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