diff --git a/cran-comments.md b/cran-comments.md
index 0371ceb4..cb80b5b8 100644
--- a/cran-comments.md
+++ b/cran-comments.md
@@ -10,3 +10,37 @@ We checked 1415 reverse dependencies (1408 from CRAN + 7 from Bioconductor), com
* We failed to check 9 packages
All breaking changes received either a patch on GitHub or an email in early November. You can see the complete set of fixes at https://github.com/tidyverse/purrr/issues/969.
+
+## revdepcheck results
+
+We checked 1437 reverse dependencies (1430 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+
+ * We saw 3 new problems
+ * We failed to check 8 packages
+
+Issues with CRAN packages are summarised below.
+
+### New problems
+(This reports the first line of each new failure)
+
+* ast2ast
+ checking tests ... ERROR
+
+* openalexR
+ checking re-building of vignette outputs ... WARNING
+
+* rearrr
+ checking tests ... ERROR
+
+Only rearr is a real problem, and it only affects their tests. The maintainer has been informed and will submit a fix ASAP.
+
+### Failed to check
+
+* elbird (NA)
+* ggPMX (NA)
+* immcp (NA)
+* ImputeRobust (NA)
+* numbat (NA)
+* pathwayTMB (NA)
+* Platypus (NA)
+* RVA (NA)
diff --git a/revdep/README.md b/revdep/README.md
index 92f7f407..9a347d94 100644
--- a/revdep/README.md
+++ b/revdep/README.md
@@ -20,26 +20,11 @@
|RVA |? | | | |
|NA |? | | | |
-## New problems (18)
+## New problems (3)
-|package |version |error |warning |note |
-|:-------------|:-------|:------|:-------|:--------|
-|[cattonum](problems.md#cattonum)|0.0.5 | | |1 __+1__ |
-|[cheese](problems.md#cheese)|0.1.1 |__+1__ |__+1__ | |
-|[connectapi](problems.md#connectapi)|0.1.2 |__+1__ | | |
-|[DataFakeR](problems.md#datafaker)|0.1.2 |__+1__ |__+1__ |1 |
-|[dibble](problems.md#dibble)|0.2.1 |__+1__ | | |
-|[ffscrapr](problems.md#ffscrapr)|1.4.7 |__+1__ |__+1__ |1 |
-|[flexsurv](problems.md#flexsurv)|2.2 |__+1__ | |2 |
-|[grizbayr](problems.md#grizbayr)|1.3.2 |__+1__ | | |
-|[gwasrapidd](problems.md#gwasrapidd)|0.99.13 |__+1__ | | |
-|[jpstat](problems.md#jpstat)|0.3.0 |__+1__ | | |
-|[naive](problems.md#naive)|1.2.1 |__+1__ | | |
-|[rATTAINS](problems.md#rattains)|0.1.3 |__+1__ |__+1__ | |
-|[ruta](problems.md#ruta)|1.1.0 |__+2__ |__+1__ |1 |
-|[sbm](problems.md#sbm)|0.4.4 |__+1__ | | |
-|[scImmuneGraph](problems.md#scimmunegraph)|1.1.3 |__+1__ | |1 |
-|[simpr](problems.md#simpr)|0.2.2 |__+1__ | | |
-|[skimr](problems.md#skimr)|2.1.4 |__+2__ |__+1__ | |
-|[tidypredict](problems.md#tidypredict)|0.4.9 |__+1__ |__+1__ | |
+|package |version |error |warning |note |
+|:---------|:-------|:------|:-------|:----|
+|[ast2ast](problems.md#ast2ast)|0.2.1 |__+1__ | | |
+|[openalexR](problems.md#openalexr)|1.0.0 | |__+1__ | |
+|[rearrr](problems.md#rearrr)|0.3.2 |__+1__ | | |
diff --git a/revdep/cran.md b/revdep/cran.md
index f7172b8f..5c444f88 100644
--- a/revdep/cran.md
+++ b/revdep/cran.md
@@ -1,8 +1,8 @@
## revdepcheck results
-We checked 1431 reverse dependencies (1424 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 1437 reverse dependencies (1430 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
- * We saw 18 new problems
+ * We saw 3 new problems
* We failed to check 8 packages
Issues with CRAN packages are summarised below.
@@ -10,69 +10,15 @@ Issues with CRAN packages are summarised below.
### New problems
(This reports the first line of each new failure)
-* cattonum
- checking R code for possible problems ... NOTE
-
-* cheese
- checking examples ... ERROR
- checking re-building of vignette outputs ... WARNING
-
-* connectapi
+* ast2ast
checking tests ... ERROR
-* DataFakeR
- checking tests ... ERROR
+* openalexR
checking re-building of vignette outputs ... WARNING
-* dibble
+* rearrr
checking tests ... ERROR
-* ffscrapr
- checking tests ... ERROR
- checking re-building of vignette outputs ... WARNING
-
-* flexsurv
- checking examples ... ERROR
-
-* grizbayr
- checking tests ... ERROR
-
-* gwasrapidd
- checking tests ... ERROR
-
-* jpstat
- checking tests ... ERROR
-
-* naive
- checking tests ... ERROR
-
-* rATTAINS
- checking tests ... ERROR
- checking re-building of vignette outputs ... WARNING
-
-* ruta
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... WARNING
-
-* sbm
- checking tests ... ERROR
-
-* scImmuneGraph
- checking examples ... ERROR
-
-* simpr
- checking tests ... ERROR
-
-* skimr
- checking examples ... ERROR
- checking tests ... ERROR
- checking re-building of vignette outputs ... WARNING
-
-* tidypredict
- checking tests ... ERROR
- checking re-building of vignette outputs ... WARNING
-
### Failed to check
* elbird (NA)
diff --git a/revdep/failures.md b/revdep/failures.md
index 6a27d118..309c9e25 100644
--- a/revdep/failures.md
+++ b/revdep/failures.md
@@ -120,7 +120,7 @@ Status: 1 ERROR, 2 NOTEs
* checking package namespace information ... OK
* checking package dependencies ... NOTE
...
- [ FAIL 1 | WARN 13 | SKIP 8 | PASS 327 ]
+ [ FAIL 1 | WARN 14 | SKIP 8 | PASS 327 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
diff --git a/revdep/problems.md b/revdep/problems.md
index f418b5f5..67221669 100644
--- a/revdep/problems.md
+++ b/revdep/problems.md
@@ -1,226 +1,14 @@
-# cattonum
-
-
-
-* Version: 0.0.5
-* GitHub: https://github.com/bfgray3/cattonum
-* Source code: https://github.com/cran/cattonum
-* Date/Publication: 2020-06-15 04:50:06 UTC
-* Number of recursive dependencies: 78
-
-Run `revdepcheck::cloud_details(, "cattonum")` for more info
-
-
-
-## Newly broken
-
-* checking R code for possible problems ... NOTE
- ```
- catto_median.data.frame : : no visible global function
- definition for ‘median’
- Undefined global functions or variables:
- median
- Consider adding
- importFrom("stats", "median")
- to your NAMESPACE file.
- ```
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# cheese
-
-
-
-* Version: 0.1.1
-* GitHub: https://github.com/zajichek/cheese
-* Source code: https://github.com/cran/cheese
-* Date/Publication: 2020-10-19 17:40:09 UTC
-* Number of recursive dependencies: 66
-
-Run `revdepcheck::cloud_details(, "cheese")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘cheese-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: descriptives
- > ### Title: Compute descriptive statistics on columns of a data frame
- > ### Aliases: descriptives
- >
- > ### ** Examples
- >
- > #Default
- ...
- 18. └─purrr:::map_depth_rec(...)
- 19. └─purrr (local) .fmap(...)
- 20. └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
- 21. ├─purrr:::with_indexed_errors(...)
- 22. │ └─base::withCallingHandlers(...)
- 23. └─purrr (local) .f(.x[[i]], ...)
- 24. └─purrr:::map_depth_rec(...)
- 25. └─cli::cli_abort("List not deep enough", call = .error_call)
- 26. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘cheese.Rmd’ using rmarkdown
- Quitting from lines 434-436 (cheese.Rmd)
- Error: processing vignette 'cheese.Rmd' failed with diagnostics:
- ℹ In index: 4.
- Caused by error in `purrr::map_depth()`:
- ! List not deep enough
- --- failed re-building ‘cheese.Rmd’
-
- ...
- ℹ In index: 4.
- Caused by error in `purrr::map_depth()`:
- ! List not deep enough
- --- failed re-building ‘describe.Rmd’
-
- SUMMARY: processing the following files failed:
- ‘cheese.Rmd’ ‘describe.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# connectapi
-
-
-
-* Version: 0.1.2
-* GitHub: https://github.com/rstudio/connectapi
-* Source code: https://github.com/cran/connectapi
-* Date/Publication: 2022-09-30 20:10:01 UTC
-* Number of recursive dependencies: 135
-
-Run `revdepcheck::cloud_details(, "connectapi")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘spelling.R’
- Running ‘test-integrated.R’
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- ────────────────────────────────────────────────────────────────────────────────
-
- ══ Results ═════════════════════════════════════════════════════════════════════
- Duration: 1.2 s
-
- ...
- ── Skipped tests ──────────────────────────────────────────────────────────────
- • Ahh! this fails presently. Are double -> POSIXct conversions allowed? (1)
- • On CRAN (1)
- • failing currently (2)
- • not implemented yet (1)
- • not tested yet (1)
-
- [ FAIL 1 | WARN 0 | SKIP 6 | PASS 116 ]
- Error: Test failures
- Execution halted
- ```
-
-# DataFakeR
-
-
-
-* Version: 0.1.2
-* GitHub: NA
-* Source code: https://github.com/cran/DataFakeR
-* Date/Publication: 2021-09-23 18:10:06 UTC
-* Number of recursive dependencies: 83
-
-Run `revdepcheck::cloud_details(, "DataFakeR")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- 31. │ └─purrr::modify(expr, prepare_expression)
- 32. │ └─cli::cli_abort("{.arg .x} must be a vector, list, or data frame, not {.obj_type_friendly {.x}}.")
- 33. │ └─rlang::abort(...)
- 34. │ └─rlang:::signal_abort(cnd, .file)
- 35. │ └─base::signalCondition(cnd)
- 36. ├─dplyr (local) ``(``)
- 37. │ └─rlang::abort(...)
- 38. │ └─rlang:::signal_abort(cnd, .file)
- 39. │ └─base::signalCondition(cnd)
- 40. └─dplyr (local) ``(``)
- 41. └─rlang::abort(...)
-
- [ FAIL 4 | WARN 2 | SKIP 1 | PASS 47 ]
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘datafaker_workflow.Rmd’ using rmarkdown
- --- finished re-building ‘datafaker_workflow.Rmd’
-
- --- re-building ‘extra_parameters.Rmd’ using rmarkdown
- Quitting from lines 68-71 (extra_parameters.Rmd)
- Error: processing vignette 'extra_parameters.Rmd' failed with diagnostics:
- Problem while computing `state = tidygraph::map_bfs(...)`.
- Caused by error in `mutate()`:
- ! Problem while computing `state = tidygraph::map_bfs(...)`.
- ...
- --- finished re-building ‘simulation_options.Rmd’
-
- --- re-building ‘structure_from_db.Rmd’ using rmarkdown
- --- finished re-building ‘structure_from_db.Rmd’
-
- SUMMARY: processing the following files failed:
- ‘extra_parameters.Rmd’ ‘simulation_methods.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘R6’
- All declared Imports should be used.
- ```
-
-# dibble
+# ast2ast
* Version: 0.2.1
-* GitHub: https://github.com/UchidaMizuki/dibble
-* Source code: https://github.com/cran/dibble
-* Date/Publication: 2022-08-07 14:20:02 UTC
-* Number of recursive dependencies: 50
+* GitHub: https://github.com/Konrad1991/ast2ast
+* Source code: https://github.com/cran/ast2ast
+* Date/Publication: 2022-10-19 07:25:07 UTC
+* Number of recursive dependencies: 76
-Run `revdepcheck::cloud_details(, "dibble")` for more info
+Run `revdepcheck::cloud_details(, "ast2ast")` for more info
@@ -228,707 +16,64 @@ Run `revdepcheck::cloud_details(, "dibble")` for more info
* checking tests ... ERROR
```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- 10. │ │ ├─base::withVisible(eval(mc, parent.frame()))
- 11. │ │ └─base::eval(mc, parent.frame())
- 12. │ │ └─base::eval(mc, parent.frame())
- 13. │ └─dibble (local) ``(...)
- 14. │ └─purrr::map2(...)
- 15. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
- 16. │ └─vctrs::vec_size_common(.x = .x, .y = .y, .call = ..error_call)
- 17. └─vctrs::stop_incompatible_size(...)
- 18. └─vctrs:::stop_incompatible(...)
- 19. └─vctrs:::stop_vctrs(...)
- 20. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = vctrs_error_call(call))
-
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 61 ]
- Error: Test failures
- Execution halted
- ```
-
-# ffscrapr
-
-
-
-* Version: 1.4.7
-* GitHub: https://github.com/ffverse/ffscrapr
-* Source code: https://github.com/cran/ffscrapr
-* Date/Publication: 2021-11-10 06:00:07 UTC
-* Number of recursive dependencies: 70
-
-Run `revdepcheck::cloud_details(, "ffscrapr")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- })`: ℹ In index: 2.
- Caused by error in `purrr::map_depth()`:
- ! List not deep enough
- ── Error (???): ff_scoringhistory returns a tibble of player scores ────────────
- Error in `.fmap(.x, function(x) {
- map_depth_rec(.fmap = .fmap, .x = x, .depth = .depth - 1,
- .f = .f, ..., .ragged = .ragged, .is_node = .is_node,
- .error_call = .error_call)
- })`: ℹ In index: 2.
- Caused by error in `purrr::map_depth()`:
- ! List not deep enough
-
- [ FAIL 4 | WARN 46 | SKIP 1 | PASS 111 ]
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘espn_authentication.Rmd’ using rmarkdown
- --- finished re-building ‘espn_authentication.Rmd’
-
- --- re-building ‘espn_basics.Rmd’ using rmarkdown
- trying URL 'https://github.com/ffverse/ffscrapr-tests/archive/1.4.7.zip'
- Content type 'application/zip' length 10326711 bytes (9.8 MB)
- ==================================================
- downloaded 9.8 MB
-
- ...
- ==================================================
- downloaded 9.8 MB
-
- --- finished re-building ‘sleeper_getendpoint.Rmd’
-
- SUMMARY: processing the following files failed:
- ‘fleaflicker_getendpoint.Rmd’ ‘mfl_basics.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespace in Imports field not imported from: ‘nflreadr’
- All declared Imports should be used.
- ```
-
-# flexsurv
-
-
-
-* Version: 2.2
-* GitHub: https://github.com/chjackson/flexsurv-dev
-* Source code: https://github.com/cran/flexsurv
-* Date/Publication: 2022-06-17 23:10:08 UTC
-* Number of recursive dependencies: 134
-
-Run `revdepcheck::cloud_details(, "flexsurv")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘flexsurv-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: tidy.flexsurvreg
- > ### Title: Tidy a flexsurv model object
- > ### Aliases: tidy.flexsurvreg
- >
- > ### ** Examples
- >
- >
- ...
- 1. ├─generics::tidy(fitg)
- 2. ├─flexsurv:::tidy.flexsurvreg(fitg)
- 3. │ └─purrr::map2_dbl(...)
- 4. │ └─purrr:::map2_("double", .x, .y, .f, ..., .progress = .progress)
- 5. │ └─vctrs::vec_size_common(.x = .x, .y = .y, .call = ..error_call)
- 6. └─vctrs::stop_incompatible_size(...)
- 7. └─vctrs:::stop_incompatible(...)
- 8. └─vctrs:::stop_vctrs(...)
- 9. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = vctrs_error_call(call))
- Execution halted
- ```
-
-## In both
-
-* checking installed package size ... NOTE
- ```
- installed size is 6.4Mb
- sub-directories of 1Mb or more:
- doc 1.1Mb
- libs 4.3Mb
- ```
-
-* checking re-building of vignette outputs ... NOTE
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘standsurv.Rmd’ using rmarkdown
- --- finished re-building ‘standsurv.Rmd’
-
- --- re-building ‘flexsurv.Rnw’ using knitr
- Error: processing vignette 'flexsurv.Rnw' failed with diagnostics:
- Running 'texi2dvi' on 'flexsurv.tex' failed.
- LaTeX errors:
- ! LaTeX Error: File `ae.sty' not found.
-
- ...
- [T1]{fontenc}^^M
- ! ==> Fatal error occurred, no output PDF file produced!
- --- failed re-building ‘flexsurv-examples.Rnw’
-
- SUMMARY: processing the following files failed:
- ‘flexsurv.Rnw’ ‘multistate.Rnw’ ‘distributions.Rnw’
- ‘flexsurv-examples.Rnw’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# grizbayr
-
-
-
-* Version: 1.3.2
-* GitHub: NA
-* Source code: https://github.com/cran/grizbayr
-* Date/Publication: 2022-08-15 18:30:02 UTC
-* Number of recursive dependencies: 60
-
-Run `revdepcheck::cloud_details(, "grizbayr")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘spelling.R’
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- ── Error ('test-sample_from_posterior.R:45'): sample_from_posterior returns correct dataframe shape for all types ──
- Error in `purrr::every(output, ~colnames(.x) == expected_col_names)`: `.p()` must return a single `TRUE` or `FALSE`, not a logical vector.
- Backtrace:
- ▆
- 1. ├─testthat::expect_true(purrr::every(output, ~colnames(.x) == expected_col_names)) at test-sample_from_posterior.R:45:2
- 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
- 3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
- 4. └─purrr::every(.p = ~colnames(.x) == expected_col_names)
- 5. └─purrr (local) .p(.x[[i]], ...)
- 6. └─cli::cli_abort(...)
- 7. └─rlang::abort(...)
-
- [ FAIL 1 | WARN 16 | SKIP 0 | PASS 245 ]
- Error: Test failures
- Execution halted
- ```
-
-# gwasrapidd
-
-
-
-* Version: 0.99.13
-* GitHub: https://github.com/ramiromagno/gwasrapidd
-* Source code: https://github.com/cran/gwasrapidd
-* Date/Publication: 2022-08-11 22:20:02 UTC
-* Number of recursive dependencies: 80
-
-Run `revdepcheck::cloud_details(, "gwasrapidd")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘spelling.R’
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- 10. │ ├─purrr:::with_indexed_errors(...)
- 11. │ │ └─base::withCallingHandlers(...)
- 12. │ └─gwasrapidd (local) .f(.x[[i]], ...)
- 13. │ └─gwasrapidd::get_variants(efo_id = .x, verbose = verbose, warnings = warnings)
- 14. │ └─gwasrapidd:::get_variants_by_efo_id(...)
- 15. │ └─gwasrapidd:::get_variants_by_efo_trait(...)
- 16. │ └─assertthat::assert_that(...)
- 17. │ └─base::stop(assertError(attr(res, "msg")))
- 18. └─purrr (local) ``(``)
- 19. └─cli::cli_abort(c(i = "In index: {i}."), parent = cnd, call = error_call)
- 20. └─rlang::abort(...)
-
- [ FAIL 1 | WARN 2 | SKIP 1 | PASS 720 ]
- Error: Test failures
+ Running ‘tinytest.R’
+ Running the tests in ‘tests/tinytest.R’ failed.
+ Complete output:
+ > if ( requireNamespace("tinytest", quietly=TRUE) ){
+ + tinytest::test_package("ast2ast")
+ + }
+
+ test_all.R.................... 0 tests
+ test_all.R.................... 0 tests
+ test_all.R.................... 0 tests
+ test_all.R.................... 0 tests Error: C stack usage 9962948 is too close to the limit
Execution halted
```
-# jpstat
+# openalexR
-* Version: 0.3.0
-* GitHub: https://github.com/UchidaMizuki/jpstat
-* Source code: https://github.com/cran/jpstat
-* Date/Publication: 2022-11-21 21:50:09 UTC
-* Number of recursive dependencies: 69
-
-Run `revdepcheck::cloud_details(, "jpstat")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- Error in `purrr::chuck(httr::content(trade), "data")`: Can't find name `data` in vector.
- Backtrace:
- ▆
- 1. ├─dplyr::collect(...) at test-webland.R:15:2
- 2. ├─jpstat:::collect.webland_trade(...)
- 3. │ ├─dplyr::rename(...)
- 4. │ ├─dplyr::rename_with(...)
- 5. │ ├─dplyr::bind_rows(purrr::chuck(httr::content(trade), "data"))
- 6. │ │ └─rlang::list2(...)
- 7. │ └─purrr::chuck(httr::content(trade), "data")
- 8. └─rlang::abort("Can't find name `data` in vector.", call = ``)
-
- [ FAIL 1 | WARN 0 | SKIP 4 | PASS 3 ]
- Error: Test failures
- Execution halted
- ```
-
-# naive
-
-
-
-* Version: 1.2.1
-* GitHub: NA
-* Source code: https://github.com/cran/naive
-* Date/Publication: 2022-11-05 09:50:02 UTC
-* Number of recursive dependencies: 122
-
-Run `revdepcheck::cloud_details(, "naive")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- ▆
- 1. └─naive::naive(...) at test-main.R:27:12
- 2. └─base::data.frame(...)
- ── Error ('test-main.R:48'): Correct outcome format and size for base outcome3 ──
- Error in `data.frame(seq_len = sqln_set, cover = round(cvr_set, 4), stride = strd_set,
- method = mthd_set, location = lctn_set, round(avg_error,
- 4))`: object 'avg_error' not found
- Backtrace:
- ▆
- 1. └─naive::naive(...) at test-main.R:48:12
- 2. └─base::data.frame(...)
-
- [ FAIL 3 | WARN 0 | SKIP 0 | PASS 0 ]
- Error: Test failures
- Execution halted
- ```
-
-# rATTAINS
-
-
-
-* Version: 0.1.3
-* GitHub: https://github.com/mps9506/rATTAINS
-* Source code: https://github.com/cran/rATTAINS
-* Date/Publication: 2021-11-03 14:10:02 UTC
-* Number of recursive dependencies: 81
-
-Run `revdepcheck::cloud_details(, "rATTAINS")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- Error in `map2(.f, .x, invoke, ..., .env = .env)`: i In index: 8.
- Caused by error in `map.function()`:
- i In index: 1.
- Caused by error:
- ! Result must be length 1, not 0.
- ── Error ('test-state_summary.R:8'): state_summary returns expected types and classes ──
- Error in `map2(.f, .x, invoke, ..., .env = .env)`: i In index: 2.
- Caused by error in `map.function()`:
- i In index: 1.
- Caused by error:
- ! Result must be length 1, not 0.
-
- [ FAIL 2 | WARN 70 | SKIP 17 | PASS 33 ]
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘Introduction.Rmd’ using rmarkdown
- Quitting from lines 42-46 (Introduction.Rmd)
- Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
- ℹ In index: 2.
- Caused by error in `map.function()`:
- ℹ In index: 1.
- Caused by error:
- ! Result must be length 1, not 0.
- --- failed re-building ‘Introduction.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘Introduction.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-# ruta
-
-
-
-* Version: 1.1.0
-* GitHub: https://github.com/fdavidcl/ruta
-* Source code: https://github.com/cran/ruta
-* Date/Publication: 2019-03-18 13:10:02 UTC
-* Number of recursive dependencies: 71
-
-Run `revdepcheck::cloud_details(, "ruta")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘ruta-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: as_network
- > ### Title: Coercion to ruta_network
- > ### Aliases: as_network as_network.ruta_layer as_network.ruta_network
- > ### as_network.numeric as_network.integer
- >
- > ### ** Examples
- >
- ...
- 15. └─ruta:::make_atomic_network(ruta_layer_dense, units = units, activation = activation)
- 16. ├─ruta::as_network(new_layer(cl, ...))
- 17. └─ruta:::as_network.ruta_layer(new_layer(cl, ...))
- 18. └─ruta::new_network(x)
- 19. ├─base::stopifnot(every(args, ~class(.) == ruta_layer))
- 20. └─purrr::every(.p = ~class(.) == ruta_layer)
- 21. └─purrr (local) .p(.x[[i]], ...)
- 22. └─cli::cli_abort(...)
- 23. └─rlang::abort(...)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- 7. └─ruta:::as_network.ruta_layer(new_layer(cl, ...))
- 8. └─ruta::new_network(x)
- 9. ├─base::stopifnot(every(args, ~class(.) == ruta_layer))
- 10. └─purrr::every(.p = ~class(.) == ruta_layer)
- 11. └─purrr (local) .p(.x[[i]], ...)
- 12. └─cli::cli_abort(...)
- 13. └─rlang::abort(...)
- ── Error ('test-layers.R:21'): networks can be built from integers ─────────────
- Error in `map(., dense)`: ℹ In index: 1.
- Caused by error in `every()`:
- ! `.p()` must return a single `TRUE` or `FALSE`, not a logical vector.
-
- [ FAIL 7 | WARN 0 | SKIP 0 | PASS 0 ]
- Error: Test failures
- Execution halted
- ```
-
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- ...
- --- re-building ‘architectures.Rmd’ using rmarkdown
- Quitting from lines 23-28 (architectures.Rmd)
- Error: processing vignette 'architectures.Rmd' failed with diagnostics:
- ℹ In index: 1.
- Caused by error in `every()`:
- ! `.p()` must return a single `TRUE` or `FALSE`, not a logical vector.
- --- failed re-building ‘architectures.Rmd’
-
- --- re-building ‘troubleshooting.Rmd’ using rmarkdown
- --- finished re-building ‘troubleshooting.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘architectures.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-
-## In both
-
-* checking LazyData ... NOTE
- ```
- 'LazyData' is specified without a 'data' directory
- ```
-
-# sbm
-
-
-
-* Version: 0.4.4
-* GitHub: https://github.com/GrossSBM/sbm
-* Source code: https://github.com/cran/sbm
-* Date/Publication: 2022-08-24 17:40:02 UTC
-* Number of recursive dependencies: 104
-
-Run `revdepcheck::cloud_details(, "sbm")` for more info
-
-
-
-## Newly broken
-
-* checking tests ... ERROR
- ```
- Running ‘spelling.R’
- Comparing ‘spelling.Rout’ to ‘spelling.Rout.save’ ...6c6
- < NULL
- ---
- > All Done!
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
-
-
- ...
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1050 ]
-
- ══ Failed tests ════════════════════════════════════════════════════════════════
- ── Failure ('test-MultipartiteSBM.R:35'): initializing Multipartite SBM works ──
- myMBM$blockProp not equivalent to list(NULL, list(numeric(0), numeric(0))).
- Component 1: target is numeric, current is NULL
-
- [ FAIL 1 | WARN 0 | SKIP 0 | PASS 1050 ]
- Error: Test failures
- Execution halted
- ```
-
-# scImmuneGraph
-
-
-
-* Version: 1.1.3
-* GitHub: https://github.com/zff-excellent/scImmuneGraph
-* Source code: https://github.com/cran/scImmuneGraph
-* Date/Publication: 2021-12-10 09:00:23 UTC
-* Number of recursive dependencies: 153
-
-Run `revdepcheck::cloud_details(, "scImmuneGraph")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘scImmuneGraph-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: BCR.CDR3ntLengthDistribution
- > ### Title: CDR3 nucleic acid length distribution in the sample
- > ### Aliases: BCR.CDR3ntLengthDistribution
- >
- > ### ** Examples
- >
- >
- ...
- 2. │ ├─... %>% purrr::set_names(sampleName)
- 3. │ └─purrr::pmap(list(datasetDir, sampleName, groupName), CreateList)
- 4. │ └─purrr:::pmap_("list", .l, .f, ..., .progress = .progress)
- 5. │ └─vctrs::vec_size_common(!!!.l, .arg = ".l", .call = ..error_call)
- 6. ├─purrr::set_names(., sampleName)
- 7. └─vctrs::stop_incompatible_size(...)
- 8. └─vctrs:::stop_incompatible(...)
- 9. └─vctrs:::stop_vctrs(...)
- 10. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = vctrs_error_call(call))
- Execution halted
- ```
-
-## In both
-
-* checking dependencies in R code ... NOTE
- ```
- Namespaces in Imports field not imported from:
- ‘BiocStyle’ ‘cowplot’ ‘easypackages’ ‘plyr’ ‘readr’ ‘stringr’
- ‘tidyverse’
- All declared Imports should be used.
- ```
-
-# simpr
-
-
-
-* Version: 0.2.2
-* GitHub: https://github.com/statisfactions/simpr
-* Source code: https://github.com/cran/simpr
-* Date/Publication: 2022-02-13 00:40:02 UTC
+* Version: 1.0.0
+* GitHub: https://github.com/massimoaria/openalexR
+* Source code: https://github.com/cran/openalexR
+* Date/Publication: 2022-10-06 10:40:02 UTC
* Number of recursive dependencies: 78
-Run `revdepcheck::cloud_details(, "simpr")` for more info
+Run `revdepcheck::cloud_details(, "openalexR")` for more info
## Newly broken
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- x[1]: id arguments\n"
- y[1]: "Error in rnorm(size): invalid arguments\n"
-
- x[2]: "Error in `map()`:\nℹ In index: 1.\nCaused by error in `rnorm()`:\n! inval
- x[2]: id arguments\n"
- y[2]: "Error in rnorm(size): invalid arguments\n"
- ── Failure ('test_errors.R:17'): errors produce new column ─────────────────────
- all(na.omit(err_out$.sim_error) == "Error in errgt(x1): x < 3 are not all TRUE\n") is not TRUE
-
- `actual`: FALSE
- `expected`: TRUE
-
- [ FAIL 2 | WARN 1 | SKIP 0 | PASS 45 ]
- Error: Test failures
- Execution halted
- ```
-
-# skimr
-
-
-
-* Version: 2.1.4
-* GitHub: https://github.com/ropensci/skimr
-* Source code: https://github.com/cran/skimr
-* Date/Publication: 2022-04-15 02:20:02 UTC
-* Number of recursive dependencies: 82
-
-Run `revdepcheck::cloud_details(, "skimr")` for more info
-
-
-
-## Newly broken
-
-* checking examples ... ERROR
- ```
- Running examples in ‘skimr-Ex.R’ failed
- The error most likely occurred in:
-
- > ### Name: skim
- > ### Title: Skim a data frame, getting useful summary statistics
- > ### Aliases: skim skim_tee skim_without_charts
- >
- > ### ** Examples
- >
- > skim(iris)
- ...
- 18. └─dplyr:::summarise.data.frame(data, dplyr::across(variable_names, mangled_skimmers$funs))
- 19. └─dplyr:::summarise_cols(.data, dplyr_quosures(...), caller_env = caller_env())
- 20. ├─base::withCallingHandlers(...)
- 21. └─dplyr:::expand_across(dots[[i]])
- 22. └─dplyr:::as_across_fn_call(fns[[j]], var, env, mask)
- 23. ├─rlang::call2(as_function(fn), sym(var))
- 24. └─rlang::as_function(fn)
- 25. └─rlang:::abort_coercion(x, "a function", arg = arg)
- 26. └─rlang::abort(msg, call = call)
- Execution halted
- ```
-
-* checking tests ... ERROR
- ```
- Running ‘testthat.R’
- Running the tests in ‘tests/testthat.R’ failed.
- Last 13 lines of output:
- ! Can't convert `fn`, NULL, to a function.
- ── Error ('test-skim_with.R:175'): Defining an integer sfl changes behavior ────
- Error in `dplyr::summarize(grouped, skimmed = purrr::map2(.data$skimmers,
- .data$skim_variable, skim_by_type, data))`: Problem while computing `skimmed = purrr::map2(...)`.
- Caused by error in `purrr::map2()`:
- ℹ In index: 1.
- Caused by error in `dplyr::summarize()`:
- ! Problem while computing `..1 = dplyr::across(variable_names,
- mangled_skimmers$funs)`.
- Caused by error in `as_across_fn_call()`:
- ! Can't convert `fn`, NULL, to a function.
-
- [ FAIL 7 | WARN 6 | SKIP 24 | PASS 622 ]
- Error: Test failures
- Execution halted
- ```
-
* checking re-building of vignette outputs ... WARNING
```
Error(s) in re-building vignettes:
- --- re-building ‘Skimr_defaults.Rmd’ using rmarkdown
- --- finished re-building ‘Skimr_defaults.Rmd’
-
- --- re-building ‘Using_fonts.Rmd’ using rmarkdown
- --- finished re-building ‘Using_fonts.Rmd’
-
- --- re-building ‘extending_skimr.Rmd’ using rmarkdown
- --- finished re-building ‘extending_skimr.Rmd’
-
- ...
- mangled_skimmers$funs)`.
- Caused by error in `as_across_fn_call()`:
- ! Can't convert `fn`, NULL, to a function.
- --- failed re-building ‘skimr.Rmd’
+ ...
+ --- re-building ‘A_Brief_Introduction_to_openalexR.Rmd’ using rmarkdown
+ Quitting from lines 237-251 (A_Brief_Introduction_to_openalexR.Rmd)
+ Error: processing vignette 'A_Brief_Introduction_to_openalexR.Rmd' failed with diagnostics:
+ $ operator is invalid for atomic vectors
+ --- failed re-building ‘A_Brief_Introduction_to_openalexR.Rmd’
SUMMARY: processing the following file failed:
- ‘skimr.Rmd’
+ ‘A_Brief_Introduction_to_openalexR.Rmd’
Error: Vignette re-building failed.
Execution halted
```
-# tidypredict
+# rearrr
-* Version: 0.4.9
-* GitHub: https://github.com/tidymodels/tidypredict
-* Source code: https://github.com/cran/tidypredict
-* Date/Publication: 2022-05-25 19:20:02 UTC
-* Number of recursive dependencies: 114
+* Version: 0.3.2
+* GitHub: https://github.com/ludvigolsen/rearrr
+* Source code: https://github.com/cran/rearrr
+* Date/Publication: 2022-11-24 09:40:02 UTC
+* Number of recursive dependencies: 74
-Run `revdepcheck::cloud_details(, "tidypredict")` for more info
+Run `revdepcheck::cloud_details(, "rearrr")` for more info
@@ -939,45 +84,20 @@ Run `revdepcheck::cloud_details(, "tidypredict")` for more info
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
- 26. │ └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = vctrs_error_call(call))
- 27. │ └─rlang:::signal_abort(cnd, .file)
- 28. │ └─base::signalCondition(cnd)
- 29. ├─purrr (local) ``(``)
- 30. │ └─cli::cli_abort(c(i = "In index: {i}."), parent = cnd, call = error_call)
- 31. │ └─rlang::abort(...)
- 32. │ └─rlang:::signal_abort(cnd, .file)
- 33. │ └─base::signalCondition(cnd)
- 34. └─purrr (local) ``(``)
- 35. └─cli::cli_abort(c(i = "In index: {i}."), parent = cnd, call = error_call)
- 36. └─rlang::abort(...)
-
- [ FAIL 1 | WARN 1 | SKIP 11 | PASS 105 ]
+ xpectr::strip(side_effects_16117[["error_class"]]) not equal to xpectr::strip(c(purrr_error, "error", "condition")).
+ Lengths differ: 4 is not 3
+ ── Failure ('test_swirl_3d.R:1554'): fuzz testing swirl_3d() ───────────────────
+ xpectr::strip(side_effects_19735[["error_class"]]) not equal to xpectr::strip(c(purrr_error, "error", "condition")).
+ Lengths differ: 4 is not 3
+ ── Failure ('test_swirl_3d.R:1584'): fuzz testing swirl_3d() ───────────────────
+ xpectr::strip(side_effects_19575[["error_class"]]) not equal to xpectr::strip(c(purrr_error, "error", "condition")).
+ Lengths differ: 4 is not 3
+ ── Failure ('test_swirl_3d.R:1988'): fuzz testing swirl_3d() ───────────────────
+ xpectr::strip(side_effects_10389[["error_class"]]) not equal to xpectr::strip(c(purrr_error, "error", "condition")).
+ Lengths differ: 4 is not 3
+
+ [ FAIL 78 | WARN 0 | SKIP 0 | PASS 7265 ]
Error: Test failures
Execution halted
```
-* checking re-building of vignette outputs ... WARNING
- ```
- Error(s) in re-building vignettes:
- --- re-building ‘cubist.Rmd’ using rmarkdown
- --- finished re-building ‘cubist.Rmd’
-
- --- re-building ‘glm.Rmd’ using rmarkdown
- --- finished re-building ‘glm.Rmd’
-
- --- re-building ‘lm.Rmd’ using rmarkdown
- --- finished re-building ‘lm.Rmd’
-
- ...
- ℹ In index: 1.
- Caused by error in `purrr::map2()`:
- ! Can't recycle `.x` (size 0) to match `.y` (size 2).
- --- failed re-building ‘xgboost.Rmd’
-
- SUMMARY: processing the following file failed:
- ‘xgboost.Rmd’
-
- Error: Vignette re-building failed.
- Execution halted
- ```
-