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----
-title: "A gentle tutorial of accelerated parameter and confidence interval estimation for Hidden Markov Models using Template Model Builder"
-output: github_document
----
-
-
-
-
-
-
-```{r setup, include=FALSE}
-knitr::opts_chunk$set(echo = TRUE)
-knitr::knit_engines$set()
-```
-*Contributors: Timothee Bacri1, Geir Drage Berentsen2, Jan Bulla1 and Sondre Hølleland3.*
-
-1) *University of Bergen, Norway.*
-2) *Norwegian Buisness school, Norway.*
-3) *Institute of Marine Research, Norway.*
-
- *Correspondance to: jan.bulla@uib.no*
-
- *Biometrical Journal paper can be found [here (correct link will come)](https://onlinelibrary.wiley.com/journal/15214036).*
-
-This repository contains the code to produce the R-bookdown website found [here](https://timothee-bacri.github.io/HMM_with_TMB/).
-
-The folders (*[code/](#code)*, *[data/](#data)*, *[functions/](#functions)*) related to the analysis code and results of the paper [LINK available later](https://www.nrk.no) are described in [Directory structure](https://timothee-bacri.github.io/HMM_with_TMB/github.html#directory-structure).
-
-## Author's github account
-
-**Timothee Bacri** - [timothee-bacri](https://github.com/timothee-bacri)
-
-**Sondre Hølleland** - [holleland](https://github.com/holleland)
-
-## License
-
-[ UNDER CONSTRUCTION ] \
-This project is licensed under the GPL v2 License - see [LICENSE](LICENSE) for details.