From 80d84055f9a5a6df5cf4ab32255af0a89e9b1a7e Mon Sep 17 00:00:00 2001 From: Tobias Rausch Date: Wed, 10 Apr 2024 15:04:14 +0200 Subject: [PATCH] cg 2024 --- courses/cg/index.html | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/courses/cg/index.html b/courses/cg/index.html index 17dff20..66ab171 100644 --- a/courses/cg/index.html +++ b/courses/cg/index.html @@ -28,7 +28,7 @@

Schedule

Exercise 1: Variant Calling (due date 24th April 2024)

- Please create a GitHub account or login to your existing account and create a new repository to analyse sequencing data. The goal of this exercise is to create a simple variant calling workflow for human sequencing data. Please describe the steps of your workflow using markdown (GitHub Markdown). The workflow should contain steps to align the FASTQ files to the human reference genome (bwa), call variants (bcftools) and annotate variants (VEP). Once you have finished the exercise, send me the repository URL of your GitHub repository and the likely causative variant via email. + Please create a GitHub account or login to your existing account and create a new repository to analyse sequencing data. The goal of this exercise is to create a simple variant calling workflow for human sequencing data. Please describe the steps of your workflow using markdown (GitHub Markdown). The workflow should contain steps to align the FASTQ files to the human reference genome (bwa), call variants (bcftools) and annotate all single-nucleotide variants with (VEP). For this excercise you can ignore all InDels. Once you have finished the exercise, send me the repository URL of your GitHub repository and the likely causative variant via email.