item in pretable.bed.gz #21
Description
Hello tprodanov, I am fortunate to learn about Parascopy developed by your team, which happens to align perfectly with my current work. I have attempted to create a pretable.bed.gz file using my existing reference genome (human hg38) and have successfully generated this file. However, I am unable to find a clear explanation of the meaning of each entry in this file, such as SEP; clip; entries; ALENGTH; SS; DIFF; NM. Additionally, I do not quite understand the content of CIGAR—does this refer to the CIGAR of a found segment of LCR sequence, or is it the CIGAR obtained by comparing the retrieved read with the reference sequence? I look forward to your reply, as this is crucial for the subsequent development of my work! Thank you!v @tprodanov
