.gitignore

# Created by https://www.toptal.com/developers/gitignore/api/r
# Edit at https://www.toptal.com/developers/gitignore?templates=r

### R ###
# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron

### R.Bookdown Stack ###
# R package: bookdown caching files
/*_files/

# End of https://www.toptal.com/developers/gitignore/api/r
.DS_Store

# data
data/BAM
data/fastq
data/fastqc
data/STAR_Index
data/reference

#
Rmd/*.html