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docker-Manta

Dockerfile for Manta, a tool for calling "structural variants (SVs) and indels from mapped paired-end sequencing reads."1.

The image can be found in docker-Manta's GitHub package page: here

Documentation

Manta main website & GitHub repository here

Manta documentation here

Version

Tool Version
Manta 1.6.0


Discussions


Contributors

Please see list of Contributors at GitHub.


References

  1. https://github.com/Illumina/manta
  2. https://academic.oup.com/bioinformatics/article/32/8/1220/1743909

License

Author: 'Timothy Sanders', 'Mohammed Faizal Eeman Mootor'

docker-Manta is licensed under the GNU General Public License version 2. See the file LICENSE for the terms of the GNU GPL license.

docker-Manta can be used to create a docker instance to use the Manta tool.

Copyright (C) 2021-2024 University of California Los Angeles ("Boutros Lab") All rights reserved.

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.