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docker-cnv_facets

Dockerfile for cnv_facets, a convenient wrapper around FACETS. This wrapper takes a tumor-normal pair of BAMs as input, and produces a VCF listing allele-specific copy-number variants.

The image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/cnv_facets

Documentation

Guide to cnv_facets usage and results here

Tips for setting --cval parameter here

Tips for understanding FACETS results here

Version

Tool Version
cnv_facets 0.16.0

Discussions


Contributors

Please see list of Contributors at GitHub.


References

  1. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5027494/
  2. https://github.com/mskcc/facets
  3. https://github.com/dariober/cnv_facets

License

Author: 'Cyriac Kandoth', 'Mohammed Faizal Eeman Mootor'

docker-cnv_facets is licensed under the GNU General Public License version 2. See the file LICENSE for the terms of the GNU GPL license.

docker-cnv_facets can be used to create a docker instance to use cnv_facets.

Copyright (C) 2021-2024 University of California Los Angeles ("Boutros Lab") All rights reserved.

This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.