Dockerfile for cnv_facets, a convenient wrapper around FACETS. This wrapper takes a tumor-normal pair of BAMs as input, and produces a VCF listing allele-specific copy-number variants.
The image is located in the Boutros Lab Docker Hub repo: https://hub.docker.com/repository/docker/blcdsdockerregistry/cnv_facets
Guide to cnv_facets usage and results here
Tips for setting --cval parameter here
Tips for understanding FACETS results here
| Tool | Version |
|---|---|
| cnv_facets | 0.16.0 |
- Issue tracker to report errors and enhancement ideas.
- Discussions can take place in docker-cnv_facets Discussions
- docker-cnv_facets pull requests are also open for discussion
Please see list of Contributors at GitHub.
- https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5027494/
- https://github.com/mskcc/facets
- https://github.com/dariober/cnv_facets
Author: 'Cyriac Kandoth', 'Mohammed Faizal Eeman Mootor'
docker-cnv_facets is licensed under the GNU General Public License version 2. See the file LICENSE for the terms of the GNU GPL license.
docker-cnv_facets can be used to create a docker instance to use cnv_facets.
Copyright (C) 2021-2024 University of California Los Angeles ("Boutros Lab") All rights reserved.
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.