Scraping Github organization for personal BPG functions #59
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lydiayliu
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Before this repo, many users of BPG don't have anywhere to submit issues and thus must take it to their own hands to fix bugs encountered or implement features required for their projects. This ship-it day project (Nov 2022) aims to find these custom definitions of bpg plotting functions, and discovery what they were trying to implement.
Limitations
Workflow
create.barplot
Hits: 3
Relevant: 1
Raag Agrawal project-CPC-GENE-MethyBiomarker
"create barplot with error bar"
Fixes problem with barplot error bar placement when there are groups, added to existing issue #33
create.boxplot
Hits: 8
Relevant: 0
create.densityplot
create.dotmap
Hits: 15
Relevant: 2 (1)
Natalie Fox project-disease-ProstateTumor-PRAD-000050-666PG
Commented out the lines that fill in the
pch
vector foris.na(x)
. The replacement is erroneous in the code because it causes misalignment betweenx
andpch
.Created issue #56
create.heatmap
Hits: 39
Relevant: 1
Natalie Fox BoutrosLab-Biomarkers-BreastCancer-hypoxia_preprocessing_sensitivity
"allows control of the height of the xaxis covariates"
Added
size
control for xaxis covariates.Created issue #57
create.hexbinplot
create.histogram
Hits: 8
create.lollipopplot
create.manhattanplot
create.multipanelplot
create.multiplot
create.polygonplot
create.scatterplot
Hits: 5
Relevant: 1 (not part of 5)
Lydia Liu project-ExerciseOncology-PRESTO1
Grouped scatterplot error bar groups need to be explicitly made "factor". Already in issue #22
create.segplot
create.stripplot
create.violinplot
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