From 236e91e782fa3bb2af143958b85a5fd8edf5444e Mon Sep 17 00:00:00 2001 From: zhuchcn Date: Thu, 3 Aug 2023 00:05:43 +0800 Subject: [PATCH] doc (moPepGen): version bump to 1.2.0 --- CHANGELOG.md | 28 +++++++++++++--------------- moPepGen/__init__.py | 2 +- 2 files changed, 14 insertions(+), 16 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 829bb99a..0eb605ad 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,7 +10,19 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm ## [Unreleased] -## [1.2.1] - 2023-07-14 +## [1.2.0] - 2023-08-03 + +### Fixed + +- Fixed that reference source are not recognized. Switched to use upper case values. #758 + +- Fixed `generateIndex` that symlink was not created properly for GTF with `--gtf-symlink`. + +- Fixed matplotlib warning message #742 + +- Fixed `parseVEP` that insertions not parsed successfully if the location is a single base. #766 + +- Fixed `callVariant` that peptides with upstream cleavage altering mutations were not called. #670 - Fixed fuzzTest to take multiple CPUs and use temporary directory. @@ -26,20 +38,6 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm - Fixed callVariant that `fit_into_codon` terminated early in fusion transcripts when there donor has a frameshift and accepter has a variant right after the breakpoint. #786 -## [1.2.0] - 2023-07-04 - -### Fixed - -- Fixed that reference source are not recognized. Switched to use upper case values. #758 - -- Fixed `generateIndex` that symlink was not created properly for GTF with `--gtf-symlink`. - -- Fixed matplotlib warning message #742 - -- Fixed `parseVEP` that insertions not parsed successfully if the location is a single base. #766 - -- Fixed `callVariant` that peptides with upstream cleavage altering mutations were not called. #670 - ## [1.1.0] - 2023-06-28 ### Fixed diff --git a/moPepGen/__init__.py b/moPepGen/__init__.py index 1faba5a4..fe28eba1 100644 --- a/moPepGen/__init__.py +++ b/moPepGen/__init__.py @@ -5,7 +5,7 @@ from typing import Iterable, IO -__version__ = '1.2.1' +__version__ = '1.2.0' ## Error messages ERROR_INDEX_IN_INTRON = 'The genomic index seems to be in an intron'