Releases: uclahs-cds/package-moPepGen
Releases · uclahs-cds/package-moPepGen
Release 0.8.1
Fixed
- The attribute
global_variant
is added to thePeptideVariantGraph
so for circRNA, if the entire variant peptide is called from an insertion sequence, the variant of circRNA is still going to be added. So the FASTA header will be written out correctly. #490
Release 0.8.0
Fixed
- Fixed issue that variants are not filtered correctly on
ThreeFrameCVG
(some variants are discarded or retained incorrectly). #488
Release 0.7.2
Fixed
- Rolled back to not filtering candidate variant peptides that overlaps with canonical peptide pool at transcript level in
PeptideVariantGraph
because accessing the shared memory object is too slow (which could be optimized in the future).
Release 0.7.1
Release 0.6.2
Fixed
- Fixed the issue that large insertions, such as retained introns, that start right after the start codon were not converted to end inclusion successfully. #470
Release 0.6.1
Fixed
- Deletion was mistreated as insertion when trying to convert to end-inclusion format. This only affects deletions that start on the third nucleotide of CDS. #468
Release 0.6.0
Release 0.5.1
Added
- Option
--denylist
is added tofilterFasta
to accept a FASTA file to exclude peptide sequences from it.