Delly Stringent filters in call-gSV pipeline #53
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Faizal-Eeman
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@tyamaguchi-ucla
I see we don't currently have Delly stringent filters applied to the pipeline like we have in
call-sSV
.We currently have mapping quality as a filter for Delly in
call-gSV
pipeline. See thetemplate.config
below,pipeline-call-gSV/pipeline/config/template.config
Line 34 in 0ba5d1e
Did we exclude the other two stringent filters,
mad_cutoff
andmin_clique_size
for a specific reason? Or Can I go ahead and add these filters in this pipeline? These filters essentially improve the runtime.Beta Was this translation helpful? Give feedback.
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