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Incorporate delly filters as parameters #6

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YBerkovich opened this issue Feb 16, 2021 · 1 comment

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YBerkovich commented Feb 16, 2021

In order to improve the call quality, implement some default parameters for SR and PE quality >= 5 leveraged in previous perl pipelines.

tyamaguchi-ucla added the enhancement label

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Adding Manta module, associated pipeline & config changes #27

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timothyjsanders commented Jun 10, 2021

@tyamaguchi-ucla "Caden resolved this issue by allowing extra arguments. See https://github.com/uclahs-cds/pipeline-call-sSNV/blob/master/pipeline/modules/mutect2-processes.nf"

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