From 089c5bcfce3f4136004f6227cab2b5aa590823c2 Mon Sep 17 00:00:00 2001
From: Nicholas Wiltsie <nwiltsie@mednet.ucla.edu>
Date: Fri, 14 Jun 2024 16:41:03 -0700
Subject: [PATCH] Update dependabot to group common submodules

---
 .github/dependabot.yml | 11 +++++++++--
 1 file changed, 9 insertions(+), 2 deletions(-)

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index e2dd116b..18078ddd 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -1,7 +1,14 @@
 ---
 version: 2
 updates:
-  - package-ecosystem: "gitsubmodule"  # See documentation for possible values
-    directory: "/"  # Location of package manifests
+  - package-ecosystem: "gitsubmodule"
+    directory: "/"
     schedule:
       interval: "weekly"
+    groups:
+      # Group these two modules together for pull requests
+      # "pipeline-submodules" is an arbitrary name
+      pipeline-submodules:
+        patterns:
+          - "*/pipeline-Nextflow-config"
+          - "*/pipeline-Nextflow-module"