From b83b2f8629262b8e1de9f2724a2b5b028b3e2669 Mon Sep 17 00:00:00 2001
From: Sorel Fitz-Gibbon <sfitzgibbon@mednet.ucla.edu>
Date: Thu, 21 Sep 2023 12:59:38 -0700
Subject: [PATCH] blarchive compression log to ./

---
 external/pipeline-Nextflow-config | 2 +-
 module/common.nf                  | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/external/pipeline-Nextflow-config b/external/pipeline-Nextflow-config
index 5e51ab58..09c39c7a 160000
--- a/external/pipeline-Nextflow-config
+++ b/external/pipeline-Nextflow-config
@@ -1 +1 @@
-Subproject commit 5e51ab584994f661639210cdb3a8c9817b944e53
+Subproject commit 09c39c7a2341d8825c3c6029105635cd68b22719
diff --git a/module/common.nf b/module/common.nf
index b5185a8e..a63ca7d2 100644
--- a/module/common.nf
+++ b/module/common.nf
@@ -88,7 +88,7 @@ process compress_file_blarchive {
     set -euo pipefail
     dereferenced_file=\$(readlink -f ${file_to_compress})
     blarchive compress_files --input \$dereferenced_file \
-        --log ${params.work_dir}
+        --log ./
     ln -s \${dereferenced_file}.bz2 ${file_to_compress}.bz2
     """
     }