From bb5d60a29f01d389128c639291f9c59542bc13ba Mon Sep 17 00:00:00 2001
From: Sorel Fitz-Gibbon <sfitzgibbon@mednet.ucla.edu>
Date: Fri, 29 Sep 2023 13:27:54 -0700
Subject: [PATCH] quoting to account for spaces

---
 test/assert_vcf.sh | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/test/assert_vcf.sh b/test/assert_vcf.sh
index b950ca6d..58c460f5 100755
--- a/test/assert_vcf.sh
+++ b/test/assert_vcf.sh
@@ -1,10 +1,10 @@
 #!/bin/bash
 function md5_vcf {
-    zcat $1 | grep -v '^##' | md5sum | cut -f 1 -d ' '
+    zcat "$1" | grep -v '^##' | md5sum | cut -f 1 -d ' '
 }
 
-received=$(md5_vcf $1)
-expected=$(md5_vcf $2)
+received=$(md5_vcf "$1")
+expected=$(md5_vcf "$2")
 
 if [ "$received" == "$expected" ]; then
     echo "VCF files are equal"