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Use samtools merge with threading #12

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yashpatel6 opened this issue May 12, 2022 · 3 comments
Open

Use samtools merge with threading #12

yashpatel6 opened this issue May 12, 2022 · 3 comments
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@yashpatel6 yashpatel6 self-assigned this May 12, 2022
@yashpatel6 yashpatel6 transferred this issue from uclahs-cds/pipeline-call-gSNP Jun 29, 2023
@tyamaguchi-ucla tyamaguchi-ucla mentioned this issue Jul 2, 2023
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@tyamaguchi-ucla
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@yashpatel6 It might be worth prioritizing this task to reduce run time, especially for large WGS samples with many RGs. Maybe we can ask Kia if he has any bandwidth.

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Agreed, we should get the benchmarking relatively soon, I'll have Kia work on it once we get the pipeline updates out in the next week or so

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kiarod commented Mar 8, 2024

I can do the benchmarking

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@tyamaguchi-ucla @yashpatel6 @kiarod